Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00225 * 2 1 4 4 H 1.48497 * 109.47005 * 240.00405 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47189 * 119.99921 * 3 2 1 7 7 C 1.37880 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00363 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47178 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47131 * 304.99817 * 11 10 9 13 13 N 1.46904 * 109.47147 * 64.99993 * 11 10 9 14 14 C 1.50698 * 109.47243 * 184.99559 * 11 10 9 15 15 O 1.21287 * 120.00541 * 260.00341 * 14 11 10 16 16 N 1.34780 * 119.99616 * 79.99803 * 14 11 10 17 17 C 1.39925 * 119.99923 * 185.27409 * 16 14 11 18 18 C 1.38901 * 120.06168 * 213.55109 * 17 16 14 19 19 C 1.38102 * 119.95057 * 180.25141 * 18 17 16 20 20 C 1.38284 * 120.08472 * 359.50106 * 19 18 17 21 21 C 1.38377 * 120.12810 * 0.24255 * 20 19 18 22 22 Cl 1.73598 * 119.98083 * 179.97438 * 21 20 19 23 23 C 1.38252 * 120.04563 * 0.02562 * 21 20 19 24 24 H 0.96999 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46966 * 60.00027 * 9 7 2 26 26 H 1.08998 * 109.47183 * 300.00421 * 9 7 2 27 27 H 1.08993 * 109.47217 * 60.00286 * 10 9 7 28 28 H 1.08998 * 109.46916 * 300.00099 * 10 9 7 29 29 H 1.00900 * 110.99584 * 296.04725 * 13 11 10 30 30 H 1.00901 * 111.00200 * 59.99610 * 13 11 10 31 31 H 0.96998 * 120.00303 * 5.28459 * 16 14 11 32 32 H 1.08001 * 120.02955 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.95980 * 179.76895 * 19 18 17 34 34 H 1.08000 * 119.93777 * 180.23383 * 20 19 18 35 35 H 1.07993 * 120.04806 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7878 -5.0073 0.8404 13 7 0.7288 -5.1181 -1.2567 14 6 2.4547 -6.1299 0.1225 15 8 2.7869 -6.7532 -0.8635 16 7 2.9572 -6.4593 1.3290 17 6 3.9441 -7.4461 1.4301 18 6 3.9875 -8.2753 2.5436 19 6 4.9656 -9.2451 2.6434 20 6 5.8955 -9.3984 1.6315 21 6 5.8523 -8.5777 0.5182 22 17 7.0220 -8.7731 -0.7496 23 6 4.8787 -7.6015 0.4153 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6043 -0.8905 29 1 0.0241 -4.4001 -1.3330 30 1 1.3489 -5.1021 -2.0526 31 1 2.6347 -6.0124 2.1272 32 1 3.2590 -8.1594 3.3325 33 1 5.0017 -9.8874 3.5109 34 1 6.6572 -10.1601 1.7102 35 1 4.8452 -6.9607 -0.4534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -30.874634 kcal Electronic energy + Delta-G solvation = -19037.441036 eV Core-core repulsion = 15867.477977 eV Total energy + Delta-G solvation = -3169.963059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65050 -38.78125 -36.64901 -35.65428 -34.73323 -32.91997 -30.94598 -30.02320 -29.88646 -26.62925 -24.31277 -23.12289 -22.35535 -20.79753 -19.90465 -18.09848 -17.48708 -16.45952 -16.27238 -15.65296 -15.05894 -14.77297 -14.65841 -14.43429 -14.20106 -13.76867 -13.60139 -13.22403 -13.02280 -12.28350 -12.17763 -11.98168 -11.80803 -11.63727 -11.18584 -11.08130 -10.95527 -10.75246 -10.41774 -10.06440 -10.01943 -9.41961 -9.30359 -8.95611 -8.48567 -8.35140 -8.27840 -6.13017 -4.16565 0.92726 1.08287 1.97046 2.65725 2.96647 3.25917 3.30978 3.33343 3.51097 4.35622 4.59449 4.77581 4.87262 4.90167 5.05655 5.20335 5.23040 5.23293 5.43637 5.56766 5.62854 5.97219 6.08213 6.10787 6.16550 6.20367 6.41165 6.72689 6.77870 7.22112 7.43252 7.46963 7.55539 7.79694 7.83613 8.15434 8.25596 8.89026 9.48742 10.97813 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.003365 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.177174 B = 8318.098270 C = 8617.021324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.077 3.923 12 H 0.100 0.900 13 N -0.830 5.830 14 C 0.525 3.475 15 O -0.513 6.513 16 N -0.677 5.677 17 C 0.172 3.828 18 C -0.147 4.147 19 C -0.088 4.088 20 C -0.135 4.135 21 C -0.014 4.014 22 Cl -0.069 7.069 23 C -0.116 4.116 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.357 0.643 30 H 0.347 0.653 31 H 0.415 0.585 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -17.313 5.807 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.038 4.038 12 H 0.118 0.882 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.386 6.386 16 N -0.323 5.323 17 C 0.076 3.924 18 C -0.167 4.167 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.041 4.041 22 Cl -0.041 7.041 23 C -0.137 4.137 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.252 0.748 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.499 -18.294 5.200 20.831 hybrid contribution 0.767 2.161 0.128 2.296 sum 9.266 -16.133 5.328 19.353 Atomic orbital electron populations 1.69930 1.06030 1.26988 1.50208 1.25004 0.94873 0.99325 0.95022 0.86636 0.79603 0.82958 0.78712 1.20183 1.21179 1.20187 1.21129 0.93004 0.90857 1.51464 0.92736 1.19096 0.93650 0.91005 0.97447 1.22414 0.99987 0.93716 1.01711 1.21477 0.94560 0.91697 0.96069 0.88176 1.58746 1.18457 1.56059 1.03023 1.21226 0.81129 0.84313 0.82036 1.90673 1.59268 1.51821 1.36823 1.43690 1.39050 1.38546 1.11005 1.17617 0.88964 0.90616 0.95173 1.21033 1.00838 0.95996 0.98861 1.20866 0.93917 0.97516 0.98365 1.20992 1.00999 1.00334 0.93098 1.20714 0.93441 0.98654 0.91284 1.98372 1.57490 1.96874 1.51320 1.21065 0.92697 0.99267 1.00717 0.92762 0.96317 0.96253 0.92378 0.92490 0.82710 0.84003 0.74787 0.84963 0.84747 0.85014 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.59 4.74 -27.89 -0.13 0.46 16 10 C -0.14 -2.58 4.78 -26.73 -0.13 -2.70 16 11 C 0.08 1.22 3.21 -68.86 -0.22 1.00 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 13 N -0.83 -13.54 8.94 -5.65 -0.05 -13.59 16 14 C 0.52 8.16 6.82 -10.99 -0.07 8.09 16 15 O -0.51 -9.42 13.94 5.55 0.08 -9.34 16 16 N -0.68 -8.41 5.34 -9.86 -0.05 -8.46 16 17 C 0.17 2.15 6.28 -83.70 -0.53 1.62 16 18 C -0.15 -1.42 9.96 -39.39 -0.39 -1.81 16 19 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 20 C -0.13 -1.32 9.83 -39.51 -0.39 -1.71 16 21 C -0.01 -0.17 6.32 -39.52 -0.25 -0.42 16 22 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.32 16 23 C -0.12 -1.61 8.44 -39.36 -0.33 -1.95 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.36 5.84 7.55 -39.29 -0.30 5.55 16 30 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 31 H 0.42 3.98 8.82 -40.82 -0.36 3.62 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 2.31 6.41 -52.49 -0.34 1.98 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -30.76 317.31 -8.47 -39.23 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.19 Total: 10.07 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.25 Total: -11.48 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.63 Total: -46.90 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.76 -8.47 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.356 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds