Wall clock time and date at job start Tue Mar 31 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99658 * 2 1 4 4 H 1.48504 * 109.46733 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47176 * 299.99526 * 3 2 1 6 6 H 1.48493 * 109.47309 * 60.00024 * 3 2 1 7 7 C 1.37877 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99679 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47277 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46577 * 55.00896 * 11 10 9 13 13 N 1.46900 * 109.47407 * 295.00519 * 11 10 9 14 14 C 1.50697 * 109.46966 * 175.00190 * 11 10 9 15 15 O 1.21294 * 119.99835 * 100.00420 * 14 11 10 16 16 N 1.34783 * 120.00281 * 280.00030 * 14 11 10 17 17 C 1.39979 * 119.99675 * 175.51789 * 16 14 11 18 18 C 1.38851 * 120.07688 * 34.69117 * 17 16 14 19 19 C 1.38119 * 119.94098 * 179.97438 * 18 17 16 20 20 C 1.38295 * 120.09443 * 359.97438 * 19 18 17 21 21 C 1.38261 * 120.14484 * 0.02562 * 20 19 18 22 22 C 1.38222 * 120.06329 * 359.74264 * 21 20 19 23 23 Cl 1.73598 * 120.05162 * 180.25340 * 22 21 20 24 24 H 0.96998 * 119.99882 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47733 * 300.00114 * 9 7 2 26 26 H 1.09005 * 109.47481 * 60.00363 * 9 7 2 27 27 H 1.09003 * 109.47216 * 300.00763 * 10 9 7 28 28 H 1.09005 * 109.46854 * 60.00320 * 10 9 7 29 29 H 1.00896 * 111.00098 * 176.04474 * 13 11 10 30 30 H 1.00905 * 110.99798 * 299.99585 * 13 11 10 31 31 H 0.96996 * 119.99485 * 355.52286 * 16 14 11 32 32 H 1.07996 * 120.02657 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.95084 * 179.97438 * 19 18 17 34 34 H 1.07991 * 119.92822 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.96908 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0033 12 1 0.7875 -5.0076 -0.8378 13 7 0.7300 -5.1176 1.2594 14 6 2.4549 -6.1298 -0.1207 15 8 2.7878 -6.7527 0.8654 16 7 2.9566 -6.4598 -1.3274 17 6 3.9319 -7.4586 -1.4305 18 6 3.8993 -8.5537 -0.5774 19 6 4.8627 -9.5379 -0.6820 20 6 5.8593 -9.4343 -1.6353 21 6 5.8953 -8.3455 -2.4866 22 6 4.9315 -7.3593 -2.3907 23 17 4.9732 -5.9957 -3.4641 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 0.8919 26 1 0.6241 -2.5575 -0.8881 27 1 2.8715 -3.6046 -0.8890 28 1 2.8727 -3.6039 0.8910 29 1 0.1656 -5.9539 1.2582 30 1 1.3506 -5.1013 2.0548 31 1 2.6418 -6.0051 -2.1243 32 1 3.1213 -8.6358 0.1671 33 1 4.8378 -10.3895 -0.0182 34 1 6.6114 -10.2051 -1.7143 35 1 6.6746 -8.2677 -3.2304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424074737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:56 Heat of formation + Delta-G solvation = -28.928139 kcal Electronic energy + Delta-G solvation = -19245.411351 eV Core-core repulsion = 16075.532699 eV Total energy + Delta-G solvation = -3169.878652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74983 -38.85754 -36.61713 -35.42481 -34.90700 -32.84216 -30.96488 -30.20623 -29.85043 -26.48047 -24.19968 -23.14597 -22.29124 -20.67253 -19.92943 -18.17107 -17.26813 -16.72704 -16.19843 -15.61781 -15.50115 -15.04732 -14.55313 -14.36348 -14.07805 -13.86304 -13.69888 -13.45712 -12.37117 -12.34875 -12.05235 -11.84004 -11.68921 -11.60773 -11.13240 -10.92389 -10.72920 -10.63218 -10.51628 -10.16741 -9.83968 -9.42455 -9.04299 -9.00549 -8.47940 -8.32945 -8.25773 -5.95384 -3.97436 0.87648 1.04502 1.92962 2.51680 2.96030 3.33439 3.41104 3.45186 3.46935 4.48820 4.54649 4.64165 4.75929 4.89164 5.01503 5.16932 5.21232 5.39480 5.42022 5.60037 5.71749 5.90878 5.93897 6.16539 6.25586 6.38298 6.58680 6.67441 7.02519 7.16792 7.38815 7.69094 7.74375 7.92894 8.02388 8.10261 8.46400 9.10471 9.65999 11.15535 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.004040 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.472838 B = 6929.332545 C = 7871.776416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.097 4.097 11 C 0.082 3.918 12 H 0.102 0.898 13 N -0.804 5.804 14 C 0.486 3.514 15 O -0.532 6.532 16 N -0.671 5.671 17 C 0.162 3.838 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.130 4.130 21 C -0.093 4.093 22 C -0.069 4.069 23 Cl -0.060 7.060 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.335 0.665 30 H 0.349 0.651 31 H 0.416 0.584 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -19.790 -5.607 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.135 4.135 11 C -0.034 4.034 12 H 0.120 0.880 13 N -0.332 5.332 14 C 0.274 3.726 15 O -0.407 6.407 16 N -0.317 5.317 17 C 0.066 3.934 18 C -0.134 4.134 19 C -0.117 4.117 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.098 4.098 23 Cl -0.031 7.031 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.197 -19.210 -5.151 21.511 hybrid contribution 0.977 0.411 -0.454 1.152 sum 9.173 -18.799 -5.604 21.656 Atomic orbital electron populations 1.69982 1.05942 1.26334 1.50907 1.24986 0.94804 0.99068 0.95442 0.86597 0.80142 0.84073 0.77547 1.19836 1.21088 1.21027 1.21302 0.92962 0.91254 1.50514 0.92903 1.19022 0.93498 0.89765 0.98276 1.21700 0.98945 0.91891 1.00949 1.21899 0.93288 0.92812 0.95441 0.87987 1.58986 1.26768 1.44348 1.03105 1.23163 0.82024 0.85626 0.81824 1.90640 1.59757 1.53348 1.37002 1.43891 1.39443 1.37145 1.11221 1.17642 0.89807 0.89736 0.96212 1.21315 1.00924 0.91411 0.99782 1.21174 0.94163 0.98550 0.97786 1.21080 0.99564 0.98136 0.96104 1.20894 0.97439 0.92952 0.99959 1.20856 0.98056 0.93009 0.97862 1.98391 1.98036 1.43188 1.63521 0.93139 0.94592 0.96792 0.92616 0.92680 0.85290 0.83632 0.74694 0.83532 0.85181 0.85136 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.92 4.78 -26.73 -0.13 -2.05 16 11 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 13 N -0.80 -12.82 8.44 -5.66 -0.05 -12.87 16 14 C 0.49 7.35 6.91 -10.98 -0.08 7.27 16 15 O -0.53 -9.00 13.67 5.55 0.08 -8.93 16 16 N -0.67 -8.84 5.05 -9.83 -0.05 -8.89 16 17 C 0.16 2.10 6.31 -83.64 -0.53 1.57 16 18 C -0.11 -1.40 8.70 -39.40 -0.34 -1.74 16 19 C -0.10 -0.95 10.04 -39.60 -0.40 -1.35 16 20 C -0.13 -1.13 10.04 -39.55 -0.40 -1.53 16 21 C -0.09 -0.91 9.82 -39.58 -0.39 -1.30 16 22 C -0.07 -0.81 6.34 -39.32 -0.25 -1.06 16 23 Cl -0.06 -0.71 27.95 -51.86 -1.45 -2.16 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.34 4.52 9.06 -39.29 -0.36 4.16 16 30 H 0.35 5.65 8.58 -39.29 -0.34 5.31 16 31 H 0.42 4.86 8.06 -40.82 -0.33 4.53 16 32 H 0.15 1.94 6.20 -52.49 -0.33 1.62 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -31.78 317.23 -8.50 -40.28 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.25 Total: 8.96 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.27 Total: -11.87 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.64 Total: -47.81 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.45 Total: -2.16 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.78 -8.50 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424074737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.351 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds