Wall clock time and date at job start Tue Mar 31 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00139 * 2 1 4 4 H 1.48492 * 109.47162 * 270.00374 * 3 2 1 5 5 H 1.48499 * 109.46789 * 30.00211 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99895 * 3 2 1 7 7 C 1.37877 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46902 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47327 * 305.00097 * 11 10 9 13 13 N 1.46902 * 109.47159 * 65.00454 * 11 10 9 14 14 C 1.50705 * 109.46703 * 185.00054 * 11 10 9 15 15 O 1.21296 * 119.99588 * 259.99725 * 14 11 10 16 16 N 1.34768 * 120.00248 * 80.00475 * 14 11 10 17 17 C 1.39974 * 120.00523 * 185.27842 * 16 14 11 18 18 C 1.38863 * 120.05571 * 33.27343 * 17 16 14 19 19 C 1.38113 * 119.94374 * 179.75203 * 18 17 16 20 20 C 1.38387 * 120.05505 * 0.26026 * 19 18 17 21 21 Cl 1.73593 * 119.94026 * 179.97438 * 20 19 18 22 22 C 1.38385 * 120.11141 * 359.97122 * 20 19 18 23 23 C 1.38106 * 120.06212 * 0.02562 * 22 20 19 24 24 H 0.96995 * 119.99936 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47169 * 59.99854 * 9 7 2 26 26 H 1.08997 * 109.47107 * 300.00108 * 9 7 2 27 27 H 1.08996 * 109.46875 * 59.99828 * 10 9 7 28 28 H 1.09004 * 109.46634 * 300.00246 * 10 9 7 29 29 H 1.00906 * 110.99530 * 296.03941 * 13 11 10 30 30 H 1.00898 * 111.00159 * 59.99761 * 13 11 10 31 31 H 0.97003 * 119.99734 * 5.26304 * 16 14 11 32 32 H 1.08001 * 120.03308 * 0.03480 * 18 17 16 33 33 H 1.07994 * 119.97226 * 180.27674 * 19 18 17 34 34 H 1.08006 * 119.96554 * 180.02562 * 22 20 19 35 35 H 1.07998 * 120.02762 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 1 0.7884 -5.0076 0.8396 13 7 0.7280 -5.1176 -1.2575 14 6 2.4549 -6.1299 0.1201 15 8 2.7862 -6.7528 -0.8665 16 7 2.9582 -6.4600 1.3259 17 6 3.9456 -7.4471 1.4259 18 6 4.8793 -7.6023 0.4099 19 6 5.8557 -8.5736 0.5133 20 6 5.9007 -9.3954 1.6259 21 17 7.1288 -10.6157 1.7525 22 6 4.9685 -9.2458 2.6376 23 6 3.9901 -8.2760 2.5391 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6048 0.8877 28 1 2.8712 -3.6039 -0.8923 29 1 0.0231 -4.3994 -1.3329 30 1 1.3475 -5.1013 -2.0538 31 1 2.6364 -6.0132 2.1246 32 1 4.8448 -6.9610 -0.4585 33 1 6.5847 -8.6918 -0.2746 34 1 5.0061 -9.8882 3.5051 35 1 3.2631 -8.1595 3.3292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:04 Heat of formation + Delta-G solvation = -31.598544 kcal Electronic energy + Delta-G solvation = -18914.157175 eV Core-core repulsion = 15744.162725 eV Total energy + Delta-G solvation = -3169.994450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65939 -38.80797 -36.69964 -35.64236 -34.68178 -32.93070 -31.27945 -30.00293 -29.68840 -26.59980 -24.27928 -23.27806 -22.31543 -20.79471 -19.91930 -18.04049 -17.49540 -16.78491 -16.29962 -15.67330 -14.86667 -14.71232 -14.68363 -14.43292 -14.10206 -13.69274 -13.63601 -13.25914 -13.05601 -12.50687 -12.28289 -12.05444 -11.82547 -11.67366 -11.18694 -11.05015 -10.97399 -10.74060 -10.27924 -10.08193 -10.01728 -9.44907 -9.31154 -9.21681 -8.50043 -8.33815 -8.19609 -6.14409 -4.17941 0.89569 1.09836 1.96377 2.63213 2.94709 3.23587 3.30614 3.33338 3.50685 4.34428 4.53963 4.66611 4.77834 5.03563 5.04802 5.19077 5.21979 5.30868 5.42204 5.59880 5.71300 5.78167 6.05435 6.07681 6.16030 6.24204 6.39383 6.71879 6.76323 7.21031 7.42044 7.45553 7.54162 7.78069 7.82385 8.13782 8.24157 8.87952 9.47516 10.96460 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.002980 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.591284 B = 9394.196540 C = 9849.945775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.138 4.138 11 C 0.077 3.923 12 H 0.100 0.900 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.514 6.514 16 N -0.677 5.677 17 C 0.165 3.835 18 C -0.112 4.112 19 C -0.089 4.089 20 C -0.057 4.057 21 Cl -0.078 7.078 22 C -0.090 4.090 23 C -0.139 4.139 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.357 0.643 30 H 0.347 0.653 31 H 0.415 0.585 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 -17.104 5.604 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.039 4.039 12 H 0.118 0.882 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.388 6.388 16 N -0.323 5.323 17 C 0.070 3.930 18 C -0.132 4.132 19 C -0.108 4.108 20 C -0.085 4.085 21 Cl -0.049 7.049 22 C -0.109 4.109 23 C -0.160 4.160 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.251 0.749 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.466 -18.180 5.132 20.700 hybrid contribution 0.755 2.057 0.267 2.207 sum 9.221 -16.123 5.399 19.342 Atomic orbital electron populations 1.69944 1.06034 1.26887 1.50286 1.25012 0.94877 0.99355 0.95032 0.86572 0.79839 0.83280 0.78219 1.20584 1.21116 1.19849 1.21163 0.93035 0.90843 1.51350 0.92680 1.19104 0.93659 0.91026 0.97451 1.22411 0.99977 0.93708 1.01694 1.21483 0.94574 0.91727 0.96074 0.88178 1.58744 1.18447 1.56087 1.03024 1.21206 0.81090 0.84271 0.82030 1.90663 1.59385 1.51921 1.36796 1.43719 1.39141 1.38472 1.10978 1.17882 0.89178 0.90381 0.95579 1.21179 0.92762 0.99374 0.99883 1.20943 0.98702 0.94471 0.96679 1.20857 0.94514 0.95359 0.97743 1.98357 1.54012 1.54461 1.98109 1.20795 0.93706 0.98299 0.98122 1.20866 1.00391 0.95609 0.99122 0.92811 0.96336 0.96238 0.92373 0.92500 0.82698 0.84017 0.74868 0.83779 0.84703 0.84695 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.32 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.53 4.78 -26.73 -0.13 -2.65 16 11 C 0.08 1.19 3.21 -68.86 -0.22 0.97 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 N -0.83 -13.33 8.94 -5.65 -0.05 -13.38 16 14 C 0.53 7.96 6.82 -10.99 -0.07 7.89 16 15 O -0.51 -9.15 13.94 5.54 0.08 -9.07 16 16 N -0.68 -8.19 5.34 -9.85 -0.05 -8.24 16 17 C 0.17 2.00 6.28 -83.68 -0.53 1.48 16 18 C -0.11 -1.44 8.65 -39.40 -0.34 -1.78 16 19 C -0.09 -1.00 9.82 -39.57 -0.39 -1.39 16 20 C -0.06 -0.61 6.32 -39.47 -0.25 -0.86 16 21 Cl -0.08 -0.76 28.95 -51.86 -1.50 -2.26 16 22 C -0.09 -0.86 9.82 -39.58 -0.39 -1.25 16 23 C -0.14 -1.37 9.96 -39.40 -0.39 -1.76 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.36 5.77 7.55 -39.29 -0.30 5.48 16 30 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 31 H 0.41 3.89 8.82 -40.82 -0.36 3.53 16 32 H 0.14 2.06 6.41 -52.49 -0.34 1.72 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -30.24 317.31 -8.47 -38.72 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.19 Total: 10.06 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.25 Total: -11.70 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.63 Total: -46.36 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.24 -8.47 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.117 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds