Wall clock time and date at job start Tue Mar 31 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38270 * 119.98513 * 2 1 4 4 C 1.38187 * 120.01110 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.98635 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.00993 * 179.97438 * 5 4 3 7 7 C 1.38322 * 119.97601 * 0.02562 * 5 4 3 8 8 C 1.38217 * 119.98659 * 179.72357 * 2 1 3 9 9 C 1.50703 * 119.99457 * 359.97438 * 8 2 1 10 10 N 1.46495 * 109.47137 * 79.99671 * 9 8 2 11 11 C 1.34783 * 119.99880 * 179.97438 * 10 9 8 12 12 O 1.21579 * 119.99780 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99910 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46987 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00278 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99893 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00238 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00010 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46764 * 90.00195 * 19 17 15 21 21 H 1.48503 * 109.47275 * 210.00297 * 19 17 15 22 22 H 1.48504 * 109.47084 * 330.00641 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.00152 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00252 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00233 * 1 2 3 26 26 H 1.08001 * 119.99309 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00712 * 180.02562 * 4 3 2 28 28 H 1.07993 * 120.01119 * 179.97438 * 7 5 4 29 29 H 1.09003 * 109.46942 * 200.00110 * 9 8 2 30 30 H 1.08996 * 109.46773 * 319.99880 * 9 8 2 31 31 H 0.96999 * 120.00383 * 0.02562 * 10 9 8 32 32 H 0.97002 * 120.00129 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.46892 * 299.99728 * 14 13 11 34 34 H 1.09000 * 109.47443 * 60.00102 * 14 13 11 35 35 H 0.96995 * 120.00759 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5799 1.1983 0.0005 5 6 4.2721 0.0000 0.0005 6 17 6.0081 0.0001 0.0005 7 6 3.5803 -1.1978 -0.0005 8 6 2.1978 -1.1971 0.0058 9 6 1.4439 -2.5020 0.0127 10 7 0.9913 -2.8116 -1.3458 11 6 0.2917 -3.9391 -1.5824 12 8 0.0358 -4.6988 -0.6684 13 7 -0.1242 -4.2242 -2.8323 14 6 -0.8851 -5.4494 -3.0894 15 6 -1.2268 -5.5303 -4.5549 16 1 -0.9093 -4.7472 -5.2275 17 6 -1.9457 -6.6035 -5.0370 18 7 -2.2434 -6.6744 -6.3160 19 14 -2.4955 -7.9577 -3.8737 20 1 -3.8347 -7.6252 -3.3248 21 1 -2.5683 -9.2446 -4.6112 22 1 -1.5206 -8.0797 -2.7601 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6577 2.1327 -0.0004 27 1 4.1196 2.1338 0.0010 28 1 4.1199 -2.1332 -0.0010 29 1 2.0984 -3.2979 0.3679 30 1 0.5808 -2.4194 0.6732 31 1 1.1958 -2.2057 -2.0751 32 1 0.0796 -3.6179 -3.5615 33 1 -0.2859 -6.3152 -2.8073 34 1 -1.8037 -5.4365 -2.5028 35 1 -2.7488 -7.4296 -6.6553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:45 Heat of formation + Delta-G solvation = -22.623842 kcal Electronic energy + Delta-G solvation = -18859.405421 eV Core-core repulsion = 15689.800144 eV Total energy + Delta-G solvation = -3169.605277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21910 -39.08612 -36.87923 -34.98365 -34.12104 -32.77814 -32.37464 -31.46450 -28.14344 -27.18450 -25.75094 -22.61483 -22.08572 -21.05997 -20.32428 -18.36342 -17.06082 -16.39905 -16.29618 -15.94867 -15.27173 -14.87702 -14.52513 -14.11937 -13.90017 -13.85184 -13.29240 -13.22681 -13.08034 -12.96080 -12.55764 -12.32351 -12.03125 -11.62034 -11.52967 -11.44707 -11.07434 -10.96419 -10.75042 -9.96102 -9.72437 -9.45744 -9.25310 -8.89426 -8.81466 -8.74332 -8.01411 -6.19819 -4.21745 0.75995 0.88417 1.83284 3.05251 3.28595 3.35207 3.44451 3.54365 3.79323 4.31530 4.35317 4.43699 4.58400 4.80909 4.86458 4.99537 5.14666 5.15920 5.36066 5.37322 5.46335 5.55782 5.69355 5.84947 5.91043 5.94013 6.27255 6.45880 6.69872 6.74565 7.12596 7.24611 7.41000 7.56838 8.28951 8.69246 8.82085 9.19906 9.41582 10.92190 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.003087 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.901560 B = 9069.191474 C = 9344.481621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.112 4.112 4 C -0.102 4.102 5 C -0.044 4.044 6 Cl -0.073 7.073 7 C -0.086 4.086 8 C -0.093 4.093 9 C 0.182 3.818 10 N -0.751 5.751 11 C 0.695 3.305 12 O -0.603 6.603 13 N -0.722 5.722 14 C 0.239 3.761 15 C -0.542 4.542 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.394 0.606 32 H 0.392 0.608 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.590 17.853 13.321 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.060 4.060 3 C -0.130 4.130 4 C -0.121 4.121 5 C -0.071 4.071 6 Cl -0.044 7.044 7 C -0.105 4.105 8 C -0.094 4.094 9 C 0.058 3.942 10 N -0.408 5.408 11 C 0.395 3.605 12 O -0.483 6.483 13 N -0.374 5.374 14 C 0.116 3.884 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.227 0.773 32 H 0.226 0.774 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.378 16.970 14.011 24.774 hybrid contribution 0.131 -0.094 -0.280 0.323 sum 11.509 16.877 13.730 24.613 Atomic orbital electron populations 1.20936 0.90280 1.03409 1.03287 1.19987 0.96776 0.92257 0.96934 1.21017 0.93198 0.98021 1.00759 1.21074 0.94330 0.96856 0.99809 1.20877 0.84594 0.95107 1.06477 1.98376 1.10035 1.98956 1.97004 1.21022 0.93496 0.97252 0.98745 1.19785 0.92807 0.94941 1.01835 1.19898 0.97842 0.91991 0.84508 1.45109 1.61090 1.24846 1.09773 1.16096 0.78913 0.81245 0.84230 1.90867 1.63120 1.50437 1.43867 1.45394 1.58421 1.26991 1.06597 1.19360 0.90579 0.81629 0.96848 1.21098 1.36531 1.09103 0.91293 0.90315 1.24783 0.94939 0.97776 0.95140 1.69876 1.38966 1.31266 1.12992 0.86811 0.80037 0.81391 0.81416 1.19860 1.20954 1.18412 0.90323 0.91305 0.90505 0.84907 0.84941 0.84582 0.90932 0.90409 0.77265 0.77450 0.95901 0.96356 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.61 36.01 0.35 -0.65 16 2 C -0.06 -0.52 5.88 -104.62 -0.62 -1.14 16 3 C -0.11 -0.86 9.70 -39.59 -0.38 -1.25 16 4 C -0.10 -0.82 9.83 -39.55 -0.39 -1.21 16 5 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 6 Cl -0.07 -0.66 28.96 -51.86 -1.50 -2.16 16 7 C -0.09 -0.84 9.45 -39.55 -0.37 -1.21 16 8 C -0.09 -0.92 5.25 -104.63 -0.55 -1.47 16 9 C 0.18 2.19 5.18 -5.20 -0.03 2.16 16 10 N -0.75 -10.41 5.55 -66.42 -0.37 -10.78 16 11 C 0.70 13.40 8.57 -86.92 -0.74 12.66 16 12 O -0.60 -14.02 16.34 5.30 0.09 -13.94 16 13 N -0.72 -14.72 5.55 -66.41 -0.37 -15.08 16 14 C 0.24 5.91 4.50 -5.19 -0.02 5.89 16 15 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 25 H 0.08 0.70 6.11 -51.93 -0.32 0.39 16 26 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.14 1.26 8.04 -52.49 -0.42 0.84 16 29 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 30 H 0.08 0.96 6.41 -51.93 -0.33 0.63 16 31 H 0.39 4.60 8.48 -40.82 -0.35 4.25 16 32 H 0.39 7.03 8.34 -40.82 -0.34 6.69 16 33 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 34 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -32.32 316.81 -8.93 -41.24 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.21 Total: 4.93 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.45 Total: -0.03 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.04 Total: -51.66 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.32 -8.93 -41.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.621 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds