Wall clock time and date at job start Tue Mar 31 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38270 * 119.98513 * 2 1 4 4 C 1.38187 * 120.01110 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.98635 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.00993 * 179.97438 * 5 4 3 7 7 C 1.38322 * 119.97601 * 0.02562 * 5 4 3 8 8 C 1.38217 * 119.98659 * 179.72357 * 2 1 3 9 9 C 1.50703 * 119.99457 * 359.97438 * 8 2 1 10 10 N 1.46495 * 109.47137 * 79.99671 * 9 8 2 11 11 C 1.34783 * 119.99880 * 179.97438 * 10 9 8 12 12 O 1.21579 * 119.99780 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99910 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46987 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00278 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99893 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00238 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00010 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46764 * 90.00195 * 19 17 15 21 21 H 1.48503 * 109.47275 * 210.00297 * 19 17 15 22 22 H 1.48504 * 109.47084 * 330.00641 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.00152 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00252 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00233 * 1 2 3 26 26 H 1.08001 * 119.99309 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00712 * 180.02562 * 4 3 2 28 28 H 1.07993 * 120.01119 * 179.97438 * 7 5 4 29 29 H 1.09003 * 109.46942 * 200.00110 * 9 8 2 30 30 H 1.08996 * 109.46773 * 319.99880 * 9 8 2 31 31 H 0.96999 * 120.00383 * 0.02562 * 10 9 8 32 32 H 0.97002 * 120.00129 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.46892 * 299.99728 * 14 13 11 34 34 H 1.09000 * 109.47443 * 60.00102 * 14 13 11 35 35 H 0.96995 * 120.00759 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5799 1.1983 0.0005 5 6 4.2721 0.0000 0.0005 6 17 6.0081 0.0001 0.0005 7 6 3.5803 -1.1978 -0.0005 8 6 2.1978 -1.1971 0.0058 9 6 1.4439 -2.5020 0.0127 10 7 0.9913 -2.8116 -1.3458 11 6 0.2917 -3.9391 -1.5824 12 8 0.0358 -4.6988 -0.6684 13 7 -0.1242 -4.2242 -2.8323 14 6 -0.8851 -5.4494 -3.0894 15 6 -1.2268 -5.5303 -4.5549 16 1 -0.9093 -4.7472 -5.2275 17 6 -1.9457 -6.6035 -5.0370 18 7 -2.2434 -6.6744 -6.3160 19 14 -2.4955 -7.9577 -3.8737 20 1 -3.8347 -7.6252 -3.3248 21 1 -2.5683 -9.2446 -4.6112 22 1 -1.5206 -8.0797 -2.7601 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6577 2.1327 -0.0004 27 1 4.1196 2.1338 0.0010 28 1 4.1199 -2.1332 -0.0010 29 1 2.0984 -3.2979 0.3679 30 1 0.5808 -2.4194 0.6732 31 1 1.1958 -2.2057 -2.0751 32 1 0.0796 -3.6179 -3.5615 33 1 -0.2859 -6.3152 -2.8073 34 1 -1.8037 -5.4365 -2.5028 35 1 -2.7488 -7.4296 -6.6553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:44 Heat of formation + Delta-G solvation = -44.320996 kcal Electronic energy + Delta-G solvation = -18860.346280 eV Core-core repulsion = 15689.800144 eV Total energy + Delta-G solvation = -3170.546137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21365 -40.35998 -37.60482 -36.37266 -35.75133 -34.40531 -33.46747 -32.45496 -29.89588 -28.03025 -26.78160 -24.08066 -23.22439 -21.96790 -21.80681 -19.97509 -18.41703 -17.82831 -17.26631 -17.14751 -16.37012 -16.29826 -16.05004 -15.39888 -15.00670 -14.78751 -14.59584 -14.47400 -14.34408 -13.89813 -13.85507 -13.67588 -13.13821 -13.00834 -12.67692 -12.33654 -12.25291 -12.13596 -11.91035 -11.77667 -11.63336 -11.33816 -10.89949 -10.31839 -10.00126 -9.64975 -9.51271 -8.38047 -6.44817 0.05064 0.19855 1.14098 1.35352 1.37334 1.50704 1.90076 2.22350 2.30672 2.61530 2.97758 3.51464 3.55322 3.78925 3.93257 4.11797 4.14151 4.42069 4.58782 4.68848 4.75200 4.77779 4.84315 4.92709 5.08021 5.19422 5.20733 5.26475 5.27970 5.46251 5.56453 5.57043 5.79787 5.98279 6.28794 6.57479 7.15610 7.26653 7.67076 8.76737 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.003087 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.901560 B = 9069.191474 C = 9344.481621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 C -0.107 4.107 4 C -0.098 4.098 5 C -0.055 4.055 6 Cl -0.074 7.074 7 C -0.094 4.094 8 C -0.101 4.101 9 C 0.184 3.816 10 N -0.727 5.727 11 C 0.697 3.303 12 O -0.643 6.643 13 N -0.722 5.722 14 C 0.252 3.748 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.026 3.974 18 N -0.932 5.932 19 Si 0.938 3.062 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.260 1.260 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.160 0.840 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.408 0.592 32 H 0.404 0.596 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.851 19.328 14.341 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.081 4.081 6 Cl -0.046 7.046 7 C -0.113 4.113 8 C -0.101 4.101 9 C 0.060 3.940 10 N -0.384 5.384 11 C 0.397 3.603 12 O -0.525 6.525 13 N -0.375 5.375 14 C 0.127 3.873 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.174 4.174 18 N -0.571 5.571 19 Si 0.762 3.238 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.184 1.184 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.178 0.822 27 H 0.171 0.829 28 H 0.152 0.848 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.240 0.760 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.674 18.509 15.026 26.545 hybrid contribution 0.121 -0.419 -0.601 0.742 sum 11.795 18.090 14.425 25.970 Atomic orbital electron populations 1.20944 0.89810 1.03787 1.03298 1.20126 0.97169 0.92285 0.96522 1.21310 0.93133 0.98582 0.99461 1.21372 0.94663 0.97178 0.98447 1.20993 0.84639 0.95452 1.07028 1.98376 1.10170 1.98965 1.97040 1.21045 0.93508 0.97640 0.99108 1.19542 0.92721 0.94213 1.03659 1.19945 0.97869 0.93125 0.83046 1.44924 1.59147 1.23088 1.11249 1.16162 0.78979 0.82058 0.83130 1.90839 1.64688 1.52141 1.44853 1.45109 1.58502 1.26188 1.07716 1.18946 0.90480 0.83031 0.94802 1.21283 1.36110 1.08537 0.92379 0.92324 1.25584 0.95107 1.00148 0.96544 1.69976 1.40042 1.32403 1.14691 0.85851 0.79790 0.78848 0.79359 1.18882 1.19907 1.18432 0.90419 0.89288 0.91843 0.82198 0.82941 0.84767 0.91673 0.90572 0.75648 0.76049 0.97219 0.97131 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.61 71.24 0.68 -1.04 16 2 C -0.06 -0.93 5.88 -19.86 -0.12 -1.05 16 3 C -0.11 -1.31 9.70 22.27 0.22 -1.10 16 4 C -0.10 -1.31 9.83 22.29 0.22 -1.09 16 5 C -0.05 -0.92 6.32 22.32 0.14 -0.78 16 6 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 7 C -0.09 -1.72 9.45 22.29 0.21 -1.51 16 8 C -0.10 -1.86 5.25 -19.87 -0.10 -1.97 16 9 C 0.18 4.30 5.18 85.63 0.44 4.74 16 10 N -0.73 -19.51 5.55 -482.31 -2.68 -22.18 16 11 C 0.70 26.54 8.57 179.05 1.53 28.07 16 12 O -0.64 -29.83 16.34 -3.96 -0.06 -29.89 16 13 N -0.72 -29.19 5.55 -482.30 -2.68 -31.87 16 14 C 0.25 12.46 4.50 85.63 0.38 12.85 16 15 C -0.55 -30.17 9.83 25.60 0.25 -29.92 16 16 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 17 C 0.03 1.49 5.47 84.66 0.46 1.96 16 18 N -0.93 -55.75 13.96 21.45 0.30 -55.45 16 19 Si 0.94 44.16 27.47 68.60 1.88 46.05 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -12.18 6.54 99.48 0.65 -11.53 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 0.89 8.09 -2.39 -0.02 0.88 16 25 H 0.06 1.08 6.11 -2.38 -0.01 1.07 16 26 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 27 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 28 H 0.13 2.43 8.04 -2.91 -0.02 2.40 16 29 H 0.06 1.64 8.01 -2.39 -0.02 1.62 16 30 H 0.08 1.84 6.41 -2.39 -0.02 1.83 16 31 H 0.41 8.92 8.48 -92.71 -0.79 8.13 16 32 H 0.40 14.28 8.34 -92.71 -0.77 13.51 16 33 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 34 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -68.73 316.81 0.53 -68.20 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.48 Total: 17.31 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.33 Total: 9.16 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -5.06 Total: -109.50 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.06 Total: -29.89 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -68.73 0.53 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.879 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds