Wall clock time and date at job start Tue Mar 31 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.98848 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47297 * 90.00421 * 5 4 3 7 7 C 1.34774 * 120.00155 * 180.02562 * 6 5 4 8 8 O 1.21589 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99916 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99800 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46910 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99960 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00031 * 179.97438 * 11 10 9 14 14 N 1.31506 * 120.00204 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99867 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47203 * 89.99922 * 15 13 11 17 17 H 1.48504 * 109.46942 * 209.99859 * 15 13 11 18 18 H 1.48500 * 109.47122 * 329.99486 * 15 13 11 19 19 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 20 20 C 1.38189 * 120.01199 * 359.97438 * 19 4 3 21 21 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 22 22 Cl 1.73595 * 120.01468 * 359.74809 * 21 2 1 23 23 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 24 24 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 25 25 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 26 26 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 27 27 H 1.08998 * 109.47388 * 210.00495 * 5 4 3 28 28 H 1.09001 * 109.47195 * 330.00365 * 5 4 3 29 29 H 0.96998 * 119.99784 * 359.97438 * 6 5 4 30 30 H 0.96998 * 120.00023 * 0.02562 * 9 7 6 31 31 H 1.09000 * 109.47460 * 299.99898 * 10 9 7 32 32 H 1.08995 * 109.47668 * 60.00448 * 10 9 7 33 33 H 0.97001 * 120.00605 * 179.97438 * 14 13 11 34 34 H 1.07997 * 119.99869 * 179.97438 * 19 4 3 35 35 H 1.08001 * 120.00973 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3335 2.5025 0.0011 6 7 4.5771 2.9251 1.3825 7 6 5.2388 4.0731 1.6293 8 8 5.6331 4.7582 0.7054 9 7 5.4624 4.4621 2.9002 10 6 6.1811 5.7103 3.1684 11 6 6.2979 5.9126 4.6572 12 1 5.8783 5.1846 5.3357 13 6 6.9403 7.0272 5.1531 14 7 7.0418 7.2041 6.4523 15 14 7.6654 8.2868 3.9795 16 1 6.6445 9.3195 3.6692 17 1 8.8448 8.9309 4.6116 18 1 8.0835 7.6113 2.7249 19 6 4.2725 0.0002 0.0005 20 6 3.5825 -1.1971 0.0005 21 6 2.1987 -1.1980 0.0005 22 17 1.3313 -2.7016 0.0078 23 1 -0.3634 0.0003 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5136 26 1 1.6583 2.1324 -0.0007 27 1 5.2861 2.3726 -0.5124 28 1 3.7444 3.2621 -0.5127 29 1 4.2616 2.3791 2.1195 30 1 5.1475 3.9158 3.6372 31 1 7.1777 5.6571 2.7301 32 1 5.6352 6.5454 2.7296 33 1 7.4941 7.9880 6.8013 34 1 5.3525 0.0008 0.0005 35 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426445375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:35 Heat of formation + Delta-G solvation = -45.833851 kcal Electronic energy + Delta-G solvation = -18588.386943 eV Core-core repulsion = 15417.775204 eV Total energy + Delta-G solvation = -3170.611739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11886 -40.37308 -37.59972 -36.37873 -35.76903 -34.41390 -33.73004 -32.20530 -29.84092 -28.00069 -26.89308 -24.07129 -23.30028 -21.91699 -21.77196 -19.93392 -18.35986 -17.89665 -17.41082 -17.12481 -16.37203 -16.32136 -15.90252 -15.35870 -15.01484 -14.97253 -14.60748 -14.39323 -14.24224 -14.16314 -13.71218 -13.34810 -13.11128 -13.01924 -12.68406 -12.55084 -12.42314 -12.18536 -11.90655 -11.68124 -11.63461 -11.32765 -10.90013 -10.32149 -9.87532 -9.65253 -9.60638 -8.38009 -6.44863 -0.02092 0.27106 1.13148 1.35609 1.37472 1.50854 1.89040 2.22174 2.30761 2.62197 2.97794 3.55304 3.57694 3.72317 3.81236 4.20006 4.25423 4.46713 4.59864 4.68535 4.70521 4.76965 4.82018 4.93294 5.08044 5.14990 5.22178 5.27177 5.34582 5.47052 5.50367 5.56789 5.77771 5.98499 6.29090 6.57451 7.15677 7.26838 7.67104 8.76777 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036709 B = 0.002735 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.564992 B =10236.163336 C =10411.642762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.096 4.096 5 C 0.183 3.817 6 N -0.730 5.730 7 C 0.696 3.304 8 O -0.643 6.643 9 N -0.722 5.722 10 C 0.251 3.749 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.026 3.974 14 N -0.932 5.932 15 Si 0.938 3.062 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.259 1.259 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.042 4.042 22 Cl -0.067 7.067 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.409 0.591 30 H 0.405 0.595 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.272 0.728 34 H 0.145 0.855 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 -19.601 -14.681 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.111 4.111 4 C -0.097 4.097 5 C 0.059 3.941 6 N -0.387 5.387 7 C 0.396 3.604 8 O -0.526 6.526 9 N -0.376 5.376 10 C 0.127 3.873 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.174 4.174 14 N -0.571 5.571 15 Si 0.762 3.238 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.183 1.183 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.069 4.069 22 Cl -0.038 7.038 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.244 0.756 30 H 0.240 0.760 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.127 -18.983 -15.371 27.271 hybrid contribution 0.148 0.094 0.619 0.643 sum -11.979 -18.889 -14.752 26.794 Atomic orbital electron populations 1.20922 0.89000 1.04134 1.03581 1.19986 0.97819 0.91073 0.99589 1.21119 0.93250 0.97987 0.98705 1.19855 0.93899 0.94197 1.01754 1.19991 0.99493 0.92516 0.82060 1.44972 1.61263 1.23083 1.09336 1.16184 0.79173 0.81807 0.83261 1.90841 1.59576 1.57416 1.44723 1.45119 1.60722 1.26131 1.05595 1.18952 0.91222 0.82388 0.94751 1.21285 1.37935 1.08600 0.90509 0.92349 1.25591 0.95589 0.99643 0.96597 1.69978 1.43863 1.29877 1.13412 0.85844 0.78924 0.79486 0.79558 1.18963 1.19882 1.18337 1.21229 1.01121 0.90743 0.98241 1.21242 0.91850 0.99789 1.00038 1.21060 0.92877 0.87018 1.05944 1.98362 1.76879 1.31758 1.96821 0.90035 0.89884 0.90704 0.83919 0.91026 0.91117 0.75561 0.76032 0.97092 0.97193 0.91851 0.83688 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.61 71.23 0.68 -0.75 16 2 C -0.08 -1.31 5.88 -19.84 -0.12 -1.42 16 3 C -0.09 -1.48 9.36 22.26 0.21 -1.28 16 4 C -0.10 -1.68 5.25 -19.87 -0.10 -1.78 16 5 C 0.18 4.07 5.80 85.63 0.50 4.57 16 6 N -0.73 -19.25 5.55 -482.32 -2.68 -21.93 16 7 C 0.70 26.41 8.57 179.05 1.53 27.94 16 8 O -0.64 -29.73 16.34 -4.00 -0.07 -29.80 16 9 N -0.72 -29.18 5.55 -482.28 -2.68 -31.86 16 10 C 0.25 12.42 4.50 85.63 0.39 12.81 16 11 C -0.55 -30.18 9.83 25.60 0.25 -29.93 16 12 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 13 C 0.03 1.47 5.47 84.66 0.46 1.93 16 14 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 15 Si 0.94 44.10 27.47 68.60 1.88 45.98 16 16 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 19 C -0.09 -1.48 9.70 22.26 0.22 -1.26 16 20 C -0.11 -1.65 9.83 22.29 0.22 -1.43 16 21 C -0.04 -0.68 6.31 22.33 0.14 -0.54 16 22 Cl -0.07 -1.01 27.30 -2.72 -0.07 -1.09 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 25 H 0.07 0.87 6.91 -2.39 -0.02 0.85 16 26 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 27 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 28 H 0.07 1.65 8.09 -2.39 -0.02 1.64 16 29 H 0.41 8.71 8.48 -92.71 -0.79 7.92 16 30 H 0.40 14.27 8.34 -92.71 -0.77 13.50 16 31 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 32 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -68.58 318.25 0.58 -68.00 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.49 Total: 17.28 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 4.38 Total: 8.87 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -5.06 Total: -109.25 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.07 Total: -29.80 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.09 kcal Total: -68.58 0.58 -68.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426445375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.171 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds