Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46756 * 2 1 4 4 C 1.46507 * 119.99624 * 91.55962 * 3 2 1 5 5 C 1.50707 * 109.47020 * 89.99667 * 4 3 2 6 6 H 1.07996 * 119.99933 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99627 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00440 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99870 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47003 * 59.99981 * 9 7 5 11 11 H 1.48504 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46888 * 299.99727 * 9 7 5 13 13 C 1.34771 * 120.00526 * 271.55108 * 3 2 1 14 14 O 1.21676 * 120.00541 * 185.86362 * 13 3 2 15 15 C 1.46743 * 119.99665 * 5.87348 * 13 3 2 16 16 C 1.34872 * 125.05139 * 186.99455 * 15 13 3 17 17 C 1.38947 * 113.65115 * 179.97438 * 16 15 13 18 18 C 1.47329 * 122.96113 * 180.02562 * 17 16 15 19 19 N 1.34776 * 119.99893 * 179.97438 * 18 17 16 20 20 O 1.21617 * 120.00228 * 0.02562 * 18 17 16 21 21 C 1.36662 * 114.07474 * 359.97438 * 17 16 15 22 22 S 1.70597 * 110.53071 * 359.72938 * 21 17 16 23 23 H 1.08991 * 109.47215 * 299.99967 * 1 2 3 24 24 H 1.09000 * 109.47168 * 59.99831 * 1 2 3 25 25 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46880 * 240.00529 * 2 1 3 27 27 H 1.08996 * 109.47166 * 120.00671 * 2 1 3 28 28 H 1.09000 * 109.46582 * 209.99633 * 4 3 2 29 29 H 1.08996 * 109.47220 * 329.99837 * 4 3 2 30 30 H 0.96997 * 120.00689 * 180.02562 * 8 7 5 31 31 H 1.07995 * 123.18021 * 359.97438 * 16 15 13 32 32 H 0.97001 * 120.00285 * 359.97438 * 19 18 17 33 33 H 0.97002 * 119.99699 * 180.02562 * 19 18 17 34 34 H 1.08003 * 124.73415 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2950 2.0603 1.2684 5 6 3.7290 1.8197 1.6646 6 1 4.3702 1.2212 1.0345 7 6 4.2222 2.3636 2.8316 8 7 3.4415 3.0928 3.5986 9 14 5.9998 2.0660 3.3224 10 1 6.9002 2.5999 2.2691 11 1 6.2802 2.7542 4.6082 12 1 6.2323 0.6078 3.4800 13 6 2.2131 2.0272 -1.1667 14 8 2.7184 3.1340 -1.1723 15 6 1.8156 1.3957 -2.4302 16 6 2.0820 1.8853 -3.6583 17 6 1.5951 1.0941 -4.6916 18 6 1.7709 1.4357 -6.1139 19 7 1.2739 0.6240 -7.0682 20 8 2.3653 2.4495 -6.4269 21 6 0.9397 -0.0293 -4.2721 22 16 0.9301 -0.1154 -2.5683 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.1248 3.1306 1.1520 29 1 1.6338 1.6692 2.0417 30 1 3.7885 3.4758 4.4194 31 1 2.6227 2.8055 -3.8232 32 1 0.8008 -0.1852 -6.8186 33 1 1.3900 0.8487 -8.0047 34 1 0.4944 -0.7629 -4.9278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439136508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = -35.880792 kcal Electronic energy + Delta-G solvation = -19595.801448 eV Core-core repulsion = 16427.665013 eV Total energy + Delta-G solvation = -3168.136436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93945 -39.12971 -36.82893 -35.40883 -33.89194 -32.90886 -30.52282 -29.79546 -27.24028 -25.41434 -23.81699 -23.25078 -21.64011 -19.61380 -19.04022 -17.94482 -17.09070 -16.88515 -16.43744 -15.77854 -15.31689 -14.95418 -14.69859 -14.41824 -14.03233 -13.99432 -13.25347 -12.91602 -12.89372 -12.47604 -12.26306 -12.10125 -11.74804 -11.27380 -11.11372 -11.06560 -10.84010 -10.59001 -10.18448 -10.00755 -9.90397 -9.71087 -9.22508 -8.89574 -8.45327 -8.38162 -7.79779 -6.06565 -4.11462 0.44461 1.46781 1.78087 1.85352 3.25773 3.31911 3.34383 3.36741 3.40617 3.72564 3.82727 4.43829 4.68304 4.87758 4.95188 5.09256 5.24309 5.28508 5.35772 5.55207 5.80008 5.80838 6.04299 6.08965 6.27615 6.33076 6.57817 6.97013 7.13138 7.35210 7.42829 7.89007 8.11176 8.18155 8.24311 8.81517 8.96458 9.53686 11.01583 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.004535 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.526618 B = 6173.006645 C = 6800.292154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.093 3.907 3 N -0.591 5.591 4 C 0.249 3.751 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.574 3.426 14 O -0.518 6.518 15 C -0.255 4.255 16 C -0.026 4.026 17 C -0.165 4.165 18 C 0.582 3.418 19 N -0.853 5.853 20 O -0.538 6.538 21 C -0.256 4.256 22 S 0.285 5.715 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.160 0.840 32 H 0.399 0.601 33 H 0.403 0.597 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 -12.843 -14.760 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.033 4.033 3 N -0.323 5.323 4 C 0.131 3.869 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.359 3.641 14 O -0.396 6.396 15 C -0.376 4.376 16 C -0.057 4.057 17 C -0.183 4.183 18 C 0.366 3.634 19 N -0.417 5.417 20 O -0.415 6.415 21 C -0.395 4.395 22 S 0.556 5.444 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.178 0.822 32 H 0.227 0.773 33 H 0.234 0.766 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.875 -12.481 -13.538 20.894 hybrid contribution 1.297 0.357 -1.160 1.776 sum -8.578 -12.125 -14.697 20.895 Atomic orbital electron populations 1.22479 0.96207 1.02534 1.02904 1.21730 0.94124 0.84756 1.02671 1.48176 1.63640 1.12729 1.07738 1.19350 0.96398 0.93750 0.77449 1.21382 0.96332 1.32705 1.06339 0.92379 1.24917 0.98007 0.94811 0.96215 1.69911 1.35964 1.33695 1.13787 0.86549 0.84817 0.78264 0.77755 1.20104 1.21154 1.20231 1.16954 0.79667 0.85589 0.81905 1.90830 1.43018 1.19733 1.86017 1.24641 1.11778 1.02242 0.98891 1.20274 0.96436 0.99997 0.88978 1.18934 1.07436 0.97785 0.94152 1.17779 0.77674 0.82657 0.85267 1.43665 1.60870 1.27601 1.09570 1.90849 1.41552 1.25904 1.83199 1.26829 1.04465 1.01573 1.06634 1.84036 1.48117 1.18389 0.93901 0.90937 0.92031 0.91093 0.91445 0.88185 0.93675 0.94542 0.92593 0.82212 0.77271 0.76565 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.96 37.16 0.33 -1.82 16 2 C 0.09 1.41 5.62 -4.04 -0.02 1.39 16 3 N -0.59 -12.31 2.46 -176.58 -0.43 -12.75 16 4 C 0.25 6.36 5.11 -5.19 -0.03 6.33 16 5 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.57 12.40 7.62 -12.83 -0.10 12.30 16 14 O -0.52 -13.60 16.45 5.21 0.09 -13.52 16 15 C -0.26 -4.27 6.13 -37.34 -0.23 -4.49 16 16 C -0.03 -0.43 9.48 -40.51 -0.38 -0.82 16 17 C -0.17 -2.17 5.82 -106.51 -0.62 -2.79 16 18 C 0.58 7.61 8.06 -12.56 -0.10 7.51 16 19 N -0.85 -6.56 8.84 30.41 0.27 -6.29 16 20 O -0.54 -9.43 17.52 5.26 0.09 -9.33 16 21 C -0.26 -2.47 10.41 30.16 0.31 -2.15 16 22 S 0.29 3.10 15.07 -107.50 -1.62 1.48 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.71 5.83 -37.30 -0.22 0.50 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.89 4.65 -23.61 -0.11 0.78 16 27 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 28 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.16 2.93 7.96 -52.49 -0.42 2.51 16 32 H 0.40 1.78 7.29 -40.82 -0.30 1.48 16 33 H 0.40 2.52 8.93 -40.82 -0.36 2.15 16 34 H 0.17 0.88 6.99 -52.48 -0.37 0.52 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -36.11 304.21 -5.95 -42.07 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.39 Total: 0.55 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.25 Total: 1.97 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.57 Total: -44.58 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.18 Total: -22.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.62 Total: 1.48 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.11 -5.95 -42.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439136508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.187 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds