Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38313 * 119.92228 * 2 1 4 4 C 1.38167 * 120.06055 * 179.72905 * 3 2 1 5 5 Cl 1.73603 * 120.04606 * 180.27535 * 4 3 2 6 6 C 1.39027 * 119.90352 * 0.56250 * 4 3 2 7 7 N 1.39750 * 120.07590 * 179.68455 * 6 4 3 8 8 C 1.46505 * 120.00272 * 180.02562 * 7 6 4 9 9 C 1.50690 * 109.47472 * 180.02562 * 8 7 6 10 10 O 1.21297 * 120.00089 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00264 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00134 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00301 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99862 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00169 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99919 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.46955 * 90.00497 * 16 14 12 18 18 H 1.48502 * 109.47072 * 210.00184 * 16 14 12 19 19 H 1.48500 * 109.47213 * 330.00092 * 16 14 12 20 20 C 1.38836 * 119.84620 * 359.71032 * 6 4 3 21 21 C 1.38158 * 119.93818 * 359.97438 * 20 6 4 22 22 C 1.50698 * 119.95333 * 179.97438 * 21 20 6 23 23 H 1.09002 * 109.47152 * 269.72582 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72682 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72663 * 1 2 3 26 26 H 1.08004 * 119.96884 * 359.97438 * 3 2 1 27 27 H 0.96999 * 120.00289 * 0.02891 * 7 6 4 28 28 H 1.09002 * 109.46866 * 300.00376 * 8 7 6 29 29 H 1.09000 * 109.46794 * 59.99906 * 8 7 6 30 30 H 0.96999 * 119.99430 * 0.02562 * 11 9 8 31 31 H 0.96999 * 120.00192 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.03311 * 180.02562 * 20 6 4 33 33 H 1.08996 * 109.47698 * 270.02223 * 22 21 20 34 34 H 1.09005 * 109.47307 * 30.02217 * 22 21 20 35 35 H 1.09005 * 109.46847 * 150.01768 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5786 1.2021 0.0057 5 17 4.4442 2.7069 0.0129 6 6 4.2747 -0.0014 -0.0005 7 7 5.6722 -0.0021 -0.0015 8 6 6.4040 -1.2713 -0.0085 9 6 7.8857 -0.9968 -0.0075 10 8 8.2907 0.1466 -0.0010 11 7 8.7610 -2.0217 -0.0127 12 6 10.1090 -1.7719 -0.0113 13 1 10.4697 -0.7539 -0.0055 14 6 11.0113 -2.8285 -0.0172 15 7 12.3035 -2.5892 -0.0153 16 14 10.3876 -4.5894 -0.0265 17 1 10.2221 -5.0484 -1.4290 18 1 11.3655 -5.4645 0.6686 19 1 9.0796 -4.6549 0.6736 20 6 3.5782 -1.2024 -0.0062 21 6 2.1966 -1.1982 -0.0052 22 6 1.4403 -2.5016 -0.0120 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5096 26 1 1.6552 2.1331 -0.0004 27 1 6.1577 0.8376 0.0026 28 1 6.1410 -1.8473 0.8787 29 1 6.1398 -1.8381 -0.9012 30 1 8.4371 -2.9360 -0.0175 31 1 12.9334 -3.3268 -0.0191 32 1 4.1159 -2.1391 -0.0106 33 1 1.2575 -2.8104 -1.0412 34 1 2.0279 -3.2654 0.4975 35 1 0.4883 -2.3720 0.5030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453139814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -26.222691 kcal Electronic energy + Delta-G solvation = -19046.341796 eV Core-core repulsion = 15876.580460 eV Total energy + Delta-G solvation = -3169.761335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89250 -38.58758 -36.46774 -35.71375 -34.11753 -32.43092 -31.84133 -31.41070 -28.06463 -27.30159 -25.38393 -24.00483 -22.12285 -20.58175 -19.58194 -18.59968 -17.27988 -16.44207 -15.63536 -15.25047 -15.07246 -15.02392 -14.35873 -14.35242 -13.77526 -13.52873 -13.23932 -13.13506 -12.95867 -12.76080 -12.39751 -12.34187 -12.20141 -12.16294 -11.55799 -11.30460 -11.13401 -11.06142 -10.72309 -10.68487 -10.08675 -9.83512 -9.71413 -8.79081 -8.64262 -8.33283 -7.25078 -6.42758 -3.95553 1.22024 1.50255 2.32048 2.94737 2.99498 3.08479 3.46066 3.52120 3.65968 4.00285 4.49951 4.70364 4.73771 5.07486 5.10633 5.12033 5.17377 5.43850 5.45579 5.50695 5.52922 5.58665 5.64946 5.68747 5.72521 5.87265 5.95319 6.12779 6.22276 6.58794 6.78136 7.26083 7.45557 7.87794 8.01788 8.43040 8.79913 9.27061 9.61207 10.69599 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.003990 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.616093 B = 7016.462215 C = 8223.328441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.150 4.150 3 C -0.056 4.056 4 C -0.120 4.120 5 Cl -0.073 7.073 6 C 0.239 3.761 7 N -0.719 5.719 8 C 0.109 3.891 9 C 0.438 3.562 10 O -0.573 6.573 11 N -0.577 5.577 12 C -0.310 4.310 13 H 0.121 0.879 14 C 0.045 3.955 15 N -0.874 5.874 16 Si 0.880 3.120 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.268 1.268 20 C -0.194 4.194 21 C -0.031 4.031 22 C -0.117 4.117 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.416 0.584 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.373 0.627 31 H 0.276 0.724 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.282 -0.399 -0.041 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.152 4.152 3 C -0.075 4.075 4 C -0.151 4.151 5 Cl -0.045 7.045 6 C 0.131 3.869 7 N -0.350 5.350 8 C -0.020 4.020 9 C 0.224 3.776 10 O -0.457 6.457 11 N -0.215 5.215 12 C -0.439 4.439 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.513 5.513 16 Si 0.706 3.294 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.193 1.193 20 C -0.217 4.217 21 C -0.032 4.032 22 C -0.173 4.173 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.257 0.743 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.206 0.794 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.526 0.235 -0.037 22.527 hybrid contribution 0.164 -1.004 0.011 1.018 sum -22.361 -0.769 -0.026 22.375 Atomic orbital electron populations 1.20652 0.91169 1.02338 1.01770 1.19339 0.95782 0.91773 1.08332 1.20599 0.91008 0.98254 0.97680 1.20289 0.92356 0.85474 1.17014 1.98350 1.76935 1.31717 1.97463 1.17536 0.84013 0.92274 0.93109 1.44661 1.01698 1.09349 1.79250 1.21014 0.91892 0.86907 1.02180 1.19595 0.86777 0.86145 0.85108 1.90566 1.78934 1.21065 1.55110 1.42111 1.07081 1.06606 1.65711 1.19447 0.78426 0.97369 1.48642 0.86109 1.25067 0.95098 0.98569 0.97194 1.69618 1.00742 1.32780 1.48181 0.86660 0.79059 0.84589 0.79064 1.19407 1.19961 1.19343 1.20464 0.93573 0.96031 1.11648 1.19540 0.92803 0.94850 0.96027 1.20846 1.00002 0.94065 1.02411 0.91832 0.91678 0.92031 0.85399 0.74300 0.90323 0.90309 0.79366 0.91367 0.85230 0.90955 0.91426 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.19 36.01 0.33 -0.46 16 2 C -0.15 -1.61 5.88 -104.59 -0.62 -2.22 16 3 C -0.06 -0.67 9.47 -39.58 -0.37 -1.04 16 4 C -0.12 -1.69 6.34 -39.31 -0.25 -1.94 16 5 Cl -0.07 -1.06 27.60 -51.86 -1.43 -2.49 16 6 C 0.24 3.53 6.65 -83.73 -0.56 2.98 16 7 N -0.72 -12.07 5.66 -59.78 -0.34 -12.41 16 8 C 0.11 1.78 5.39 -5.20 -0.03 1.75 16 9 C 0.44 9.69 7.85 -10.99 -0.09 9.61 16 10 O -0.57 -15.05 15.24 5.54 0.08 -14.96 16 11 N -0.58 -13.28 5.09 -10.97 -0.06 -13.34 16 12 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 13 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 16 Si 0.88 18.67 27.74 -169.99 -4.71 13.96 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 19 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 20 C -0.19 -2.46 8.96 -39.39 -0.35 -2.81 16 21 C -0.03 -0.34 5.88 -104.65 -0.62 -0.96 16 22 C -0.12 -0.92 9.18 36.00 0.33 -0.59 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.43 6.69 -51.93 -0.35 0.08 16 25 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 27 H 0.42 7.79 6.11 -40.82 -0.25 7.54 16 28 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 29 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 30 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 31 H 0.28 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.13 1.47 6.74 -52.48 -0.35 1.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.07 0.47 6.69 -51.93 -0.35 0.12 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -31.15 310.58 -7.49 -38.64 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -4.02 Total: 13.44 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.46 Total: -3.31 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.38 Total: -49.95 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.96 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.96 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.43 Total: -2.49 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.15 -7.49 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453139814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.415 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds