Wall clock time and date at job start Tue Mar 31 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42095 * 109.47144 * 2 1 4 4 C 1.76205 * 102.99577 * 250.94735 * 2 1 3 5 5 C 1.38302 * 119.96558 * 90.00713 * 4 2 1 6 6 C 1.38258 * 120.13859 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07389 * 359.97438 * 6 5 4 8 8 C 1.38848 * 119.93084 * 0.02562 * 7 6 5 9 9 N 1.39942 * 120.07520 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99888 * 213.15921 * 9 8 7 11 11 O 1.21590 * 120.00148 * 5.30852 * 10 9 8 12 12 N 1.34778 * 119.99529 * 185.30766 * 10 9 8 13 13 C 1.46500 * 119.99744 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47294 * 180.02562 * 13 12 10 15 15 H 1.08009 * 119.99767 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47323 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.47304 * 210.00224 * 18 16 14 21 21 H 1.48500 * 109.47287 * 330.00015 * 18 16 14 22 22 C 1.38095 * 119.96115 * 269.72319 * 4 2 1 23 23 H 1.09003 * 109.47104 * 49.04965 * 1 2 3 24 24 H 1.08995 * 109.47119 * 169.05240 * 1 2 3 25 25 H 1.09006 * 109.46517 * 289.05385 * 1 2 3 26 26 H 1.07998 * 119.92914 * 0.02562 * 5 4 2 27 27 H 1.08007 * 119.95801 * 180.02562 * 6 5 4 28 28 H 1.08000 * 120.04169 * 179.97438 * 7 6 5 29 29 H 0.97002 * 119.99898 * 33.15367 * 9 8 7 30 30 H 0.96998 * 120.00450 * 359.97438 * 12 10 9 31 31 H 1.08997 * 109.47108 * 299.99994 * 13 12 10 32 32 H 1.09004 * 109.46998 * 60.00117 * 13 12 10 33 33 H 0.96998 * 120.00207 * 179.97438 * 17 16 14 34 34 H 1.07996 * 120.03514 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5605 -1.6229 5 6 2.3658 0.3523 -2.6502 6 6 2.6762 -0.0835 -3.9250 7 6 2.8325 -1.4327 -4.1764 8 6 2.6771 -2.3517 -3.1472 9 7 2.8342 -3.7194 -3.3986 10 6 2.0978 -4.6189 -2.7166 11 8 1.2298 -4.2408 -1.9536 12 7 2.3236 -5.9375 -2.8803 13 6 1.5236 -6.9152 -2.1386 14 6 1.9724 -8.3081 -2.4983 15 1 2.7739 -8.4507 -3.2082 16 6 1.3607 -9.4003 -1.9205 17 7 0.3852 -9.2267 -1.0558 18 14 1.9176 -11.1269 -2.3659 19 1 2.9967 -11.5535 -1.4393 20 1 0.7696 -12.0620 -2.2527 21 1 2.4292 -11.1378 -3.7600 22 6 2.3710 -1.9103 -1.8663 23 1 -0.3633 0.6736 -0.7762 24 1 -0.3633 -1.0089 -0.1952 25 1 -0.3632 0.3355 0.9714 26 1 2.2445 1.4078 -2.4561 27 1 2.7974 0.6319 -4.7250 28 1 3.0746 -1.7726 -5.1725 29 1 3.4731 -4.0199 -4.0637 30 1 3.0158 -6.2391 -3.4892 31 1 1.6561 -6.7562 -1.0684 32 1 0.4714 -6.7942 -2.3964 33 1 -0.0454 -9.9951 -0.6496 34 1 2.2536 -2.6222 -1.0627 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488261064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:59 Heat of formation + Delta-G solvation = -39.615812 kcal Electronic energy + Delta-G solvation = -19022.968472 eV Core-core repulsion = 15854.670074 eV Total energy + Delta-G solvation = -3168.298398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27653 -38.39523 -35.75987 -34.67952 -34.18177 -32.42120 -31.11946 -29.53649 -28.79542 -27.04859 -23.47499 -23.03776 -21.99789 -20.32675 -18.55958 -18.19052 -17.00616 -16.24498 -16.06376 -15.38954 -15.26866 -14.87829 -14.75874 -14.55687 -14.07912 -13.71228 -13.53268 -13.19684 -12.89682 -12.74948 -12.09597 -12.05878 -12.01816 -11.71442 -11.66682 -11.02553 -10.96099 -10.41380 -10.37206 -10.18986 -9.60671 -9.45929 -9.17117 -8.81799 -8.39746 -8.20662 -7.81616 -6.22504 -4.29622 0.87783 1.38452 1.85777 2.65577 3.05803 3.20761 3.27825 3.29905 3.46992 3.78191 3.97928 4.26914 4.80136 4.88824 5.02423 5.12362 5.14165 5.20311 5.26691 5.50061 5.56031 5.78953 5.95766 6.19765 6.28630 6.32808 6.49635 6.93591 7.07736 7.30632 7.42566 7.45166 7.74319 7.92148 8.60220 8.75831 9.08658 9.37466 10.87557 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.003451 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.731033 B = 8112.685087 C = 8878.624793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.332 4.668 3 O -0.866 6.866 4 C -0.439 4.439 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.122 4.122 8 C 0.167 3.833 9 N -0.696 5.696 10 C 0.690 3.310 11 O -0.583 6.583 12 N -0.720 5.720 13 C 0.265 3.735 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.046 4.046 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.404 0.596 30 H 0.389 0.611 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.267 0.733 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 14.068 -2.130 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.530 4.470 3 O -0.862 6.862 4 C -0.537 4.537 5 C -0.103 4.103 6 C -0.135 4.135 7 C -0.143 4.143 8 C 0.070 3.930 9 N -0.344 5.344 10 C 0.391 3.609 11 O -0.461 6.461 12 N -0.372 5.372 13 C 0.145 3.855 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.068 4.068 23 H 0.098 0.902 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.239 0.761 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.858 14.415 -0.530 15.221 hybrid contribution -0.082 -0.107 -2.772 2.775 sum 4.777 14.309 -3.302 15.442 Atomic orbital electron populations 1.27725 1.21908 1.08545 1.06985 1.69686 0.86273 0.98792 0.92292 1.93037 1.73400 1.37691 1.82030 1.27487 1.11148 0.98918 1.16111 1.20977 0.97506 0.99206 0.92562 1.20944 1.00650 0.94992 0.96945 1.21034 1.02359 0.93112 0.97825 1.17597 0.99428 0.82577 0.93402 1.42859 1.43874 1.03641 1.44051 1.16161 0.81670 0.81743 0.81373 1.90877 1.35052 1.79129 1.41037 1.45805 1.40193 1.03476 1.47681 1.19077 0.90554 0.84323 0.91590 1.21197 1.19994 0.90263 1.26902 0.91903 1.24926 0.94677 0.99590 0.94682 1.69963 1.23053 1.31253 1.27853 0.86407 0.78294 0.83319 0.78836 1.20410 1.20987 1.19793 1.20958 0.95793 0.93739 0.96297 0.90163 0.86438 0.87702 0.85869 0.85752 0.85561 0.76102 0.77844 0.95277 0.95470 0.92361 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -5.00 10.70 101.05 1.08 -3.92 16 2 S 1.33 14.18 14.19 -107.50 -1.52 12.66 16 3 O -0.87 -13.71 16.89 -35.23 -0.60 -14.30 16 4 C -0.44 -5.73 5.61 -39.61 -0.22 -5.95 16 5 C -0.08 -1.09 9.44 -39.55 -0.37 -1.46 16 6 C -0.12 -1.35 10.04 -39.61 -0.40 -1.75 16 7 C -0.12 -1.44 9.96 -39.40 -0.39 -1.83 16 8 C 0.17 2.33 6.28 -83.68 -0.53 1.81 16 9 N -0.70 -9.69 5.35 -14.22 -0.08 -9.76 16 10 C 0.69 12.80 8.30 -86.91 -0.72 12.08 16 11 O -0.58 -12.73 14.04 5.29 0.07 -12.66 16 12 N -0.72 -13.96 5.55 -66.41 -0.37 -14.32 16 13 C 0.27 6.59 5.43 -5.20 -0.03 6.56 16 14 C -0.55 -14.05 9.28 -34.44 -0.32 -14.37 16 15 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.88 -24.98 13.29 55.43 0.74 -24.24 16 18 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 22 C -0.05 -0.65 8.36 -39.39 -0.33 -0.98 16 23 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.12 1.65 7.45 -52.49 -0.39 1.26 16 27 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.40 4.20 8.83 -40.82 -0.36 3.84 16 30 H 0.39 6.34 8.34 -40.82 -0.34 6.00 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.15 2.18 6.42 -52.49 -0.34 1.84 16 LS Contribution 312.79 15.07 4.71 4.71 Total: -1.00 -35.24 312.79 -8.31 -43.55 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.92 Total: 7.51 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.33 Total: -8.17 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.29 Total: -48.33 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.52 Total: -26.96 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 14.18 SS G_CDS: -1.52 Total: 12.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.24 -8.31 -43.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488261064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.930 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds