Wall clock time and date at job start Tue Mar 31 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42105 * 109.47477 * 2 1 4 4 C 1.76195 * 103.00209 * 109.05654 * 2 1 3 5 5 C 1.38309 * 119.96585 * 89.99680 * 4 2 1 6 6 C 1.38255 * 120.13999 * 180.02562 * 5 4 2 7 7 C 1.38134 * 120.07065 * 0.25558 * 6 5 4 8 8 C 1.38845 * 119.92925 * 359.49076 * 7 6 5 9 9 N 1.39949 * 120.07190 * 180.27227 * 8 7 6 10 10 C 1.34768 * 120.00317 * 213.50405 * 9 8 7 11 11 O 1.21586 * 120.00183 * 5.31515 * 10 9 8 12 12 N 1.34781 * 120.00376 * 185.31623 * 10 9 8 13 13 C 1.46494 * 120.00078 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47144 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99787 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00268 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00086 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00118 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46848 * 120.00418 * 18 16 14 21 21 H 1.48492 * 109.47297 * 240.00446 * 18 16 14 22 22 C 1.38088 * 119.96624 * 270.02474 * 4 2 1 23 23 H 1.08998 * 109.47486 * 310.94549 * 1 2 3 24 24 H 1.09002 * 109.47460 * 70.94319 * 1 2 3 25 25 H 1.09000 * 109.47446 * 190.94711 * 1 2 3 26 26 H 1.08000 * 119.92817 * 0.02562 * 5 4 2 27 27 H 1.08000 * 119.96713 * 179.97438 * 6 5 4 28 28 H 1.08002 * 120.03410 * 179.74227 * 7 6 5 29 29 H 0.97005 * 119.99821 * 33.49925 * 9 8 7 30 30 H 0.97005 * 119.99230 * 0.02562 * 12 10 9 31 31 H 1.09000 * 109.47510 * 299.99804 * 13 12 10 32 32 H 1.08998 * 109.46994 * 60.00427 * 13 12 10 33 33 H 0.96999 * 120.00071 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.03574 * 359.94862 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2103 -0.5605 1.6227 5 6 2.3657 -1.9128 1.8677 6 6 2.6762 -2.3567 3.1397 7 6 2.8271 -1.4506 4.1714 8 6 2.6770 -0.0919 3.9276 9 7 2.8348 0.8291 4.9693 10 6 2.0974 1.9570 4.9892 11 8 1.2279 2.1296 4.1570 12 7 2.3238 2.8937 5.9315 13 6 1.5226 4.1200 5.9526 14 6 1.9724 4.9943 7.0947 15 1 2.7753 4.6692 7.7399 16 6 1.3600 6.2097 7.3152 17 7 0.3828 6.6058 6.5293 18 14 1.9171 7.2931 8.7313 19 1 3.0245 6.6242 9.4603 20 1 2.3907 8.5967 8.2005 21 1 0.7795 7.5200 9.6583 22 6 2.3650 0.3507 2.6486 23 1 -0.3634 0.6734 0.7762 24 1 -0.3634 0.3355 -0.9713 25 1 -0.3634 -1.0089 0.1952 26 1 2.2442 -2.6236 1.0637 27 1 2.7965 -3.4133 3.3280 28 1 3.0656 -1.7982 5.1657 29 1 3.4750 0.6557 5.6772 30 1 3.0178 2.7562 6.5951 31 1 1.6530 4.6556 5.0123 32 1 0.4709 3.8646 6.0825 33 1 -0.0484 7.4607 6.6846 34 1 2.2439 1.4066 2.4566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488261065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:02 Heat of formation + Delta-G solvation = -38.876029 kcal Electronic energy + Delta-G solvation = -19156.374657 eV Core-core repulsion = 15988.108338 eV Total energy + Delta-G solvation = -3168.266319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23141 -38.35652 -35.64977 -34.66541 -34.14163 -32.38434 -31.05363 -29.53311 -28.76755 -27.01698 -23.43434 -23.00352 -21.98768 -20.29255 -18.47033 -18.19016 -16.92224 -16.22415 -16.01125 -15.38442 -15.18955 -14.76180 -14.70323 -14.60313 -13.97313 -13.75229 -13.47583 -13.15986 -12.85702 -12.71989 -12.03725 -12.03017 -11.98362 -11.86167 -11.48523 -10.96583 -10.95169 -10.34185 -10.32416 -10.15650 -9.55107 -9.40237 -9.12962 -8.78477 -8.42106 -8.16904 -7.77781 -6.18466 -4.25853 0.90655 1.41271 1.93011 2.67697 3.09829 3.22581 3.29810 3.33098 3.51563 3.89286 3.99571 4.29977 4.81090 4.91598 5.05098 5.11707 5.17805 5.19335 5.25042 5.53649 5.59834 5.83722 5.98763 6.24721 6.29939 6.38776 6.54477 6.98973 7.12428 7.36405 7.46693 7.50021 7.78900 7.96054 8.65064 8.80369 9.14627 9.41129 10.91839 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.003683 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.418231 B = 7601.415100 C = 8420.792393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.328 4.672 3 O -0.852 6.852 4 C -0.443 4.443 5 C -0.075 4.075 6 C -0.118 4.118 7 C -0.124 4.124 8 C 0.168 3.832 9 N -0.697 5.697 10 C 0.689 3.311 11 O -0.582 6.582 12 N -0.720 5.720 13 C 0.265 3.735 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.055 4.055 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.404 0.596 30 H 0.389 0.611 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -22.089 -10.436 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.525 4.475 3 O -0.847 6.847 4 C -0.540 4.540 5 C -0.095 4.095 6 C -0.138 4.138 7 C -0.145 4.145 8 C 0.070 3.930 9 N -0.345 5.345 10 C 0.389 3.611 11 O -0.460 6.460 12 N -0.372 5.372 13 C 0.144 3.856 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.076 4.076 23 H 0.106 0.894 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.239 0.761 30 H 0.221 0.779 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.949 -21.322 -11.887 24.908 hybrid contribution -0.090 1.779 3.359 3.802 sum 4.859 -19.543 -8.528 21.869 Atomic orbital electron populations 1.27741 1.22424 1.07911 1.07427 1.69197 0.86320 0.99973 0.92055 1.93169 1.72961 1.37047 1.81559 1.27589 1.11117 0.99353 1.15945 1.20700 0.98281 0.93377 0.97146 1.20966 1.00834 0.99148 0.92825 1.21045 1.02573 0.91076 0.99846 1.17666 0.99295 0.88445 0.87584 1.42859 1.43723 1.20996 1.26904 1.16187 0.81798 0.79861 0.83251 1.90903 1.35100 1.78769 1.41190 1.45777 1.40072 1.20362 1.30943 1.19080 0.90511 0.78361 0.97660 1.21231 1.19847 1.03349 1.13779 0.91800 1.24952 0.94713 0.97560 0.96785 1.69988 1.23072 1.21445 1.37651 0.86326 0.78559 0.80223 0.81587 1.19637 1.20732 1.20755 1.21298 0.94880 1.01330 0.90108 0.89389 0.87846 0.87296 0.84866 0.85382 0.85627 0.76133 0.77863 0.95450 0.95517 0.92424 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.04 10.70 101.05 1.08 -3.96 16 2 S 1.33 13.89 14.19 -107.50 -1.52 12.36 16 3 O -0.85 -15.71 16.90 -35.23 -0.60 -16.31 16 4 C -0.44 -5.74 5.61 -39.61 -0.22 -5.96 16 5 C -0.07 -0.69 9.75 -39.55 -0.39 -1.07 16 6 C -0.12 -1.13 10.04 -39.61 -0.40 -1.52 16 7 C -0.12 -1.47 9.96 -39.40 -0.39 -1.86 16 8 C 0.17 2.68 6.28 -83.69 -0.53 2.15 16 9 N -0.70 -11.49 5.35 -14.22 -0.08 -11.57 16 10 C 0.69 15.05 8.30 -86.92 -0.72 14.33 16 11 O -0.58 -15.27 14.03 5.29 0.07 -15.20 16 12 N -0.72 -15.91 5.55 -66.42 -0.37 -16.28 16 13 C 0.26 7.29 5.43 -5.19 -0.03 7.26 16 14 C -0.54 -15.07 9.28 -34.44 -0.32 -15.39 16 15 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.88 -26.63 13.29 55.43 0.74 -25.89 16 18 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.05 -0.97 8.05 -39.40 -0.32 -1.29 16 23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 27 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.40 5.01 8.84 -40.82 -0.36 4.65 16 30 H 0.39 7.21 8.34 -40.82 -0.34 6.87 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.15 3.26 5.81 -52.49 -0.30 2.96 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -40.75 312.78 -8.31 -49.06 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.92 Total: 8.56 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.33 Total: -5.61 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.29 Total: -53.75 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.52 Total: -31.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 13.89 SS G_CDS: -1.52 Total: 12.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -40.75 -8.31 -49.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488261065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.184 kcal (2) G-P(sol) polarization free energy of solvation -40.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds