Wall clock time and date at job start Tue Mar 31 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 109.46967 * 2 1 4 4 C 1.76200 * 103.00020 * 250.94616 * 2 1 3 5 5 C 1.38281 * 119.92829 * 269.72314 * 4 2 1 6 6 C 1.38119 * 120.06651 * 180.27544 * 5 4 2 7 7 C 1.38861 * 119.92939 * 359.97438 * 6 5 4 8 8 N 1.39951 * 120.06629 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00037 * 213.28868 * 8 7 6 10 10 O 1.21590 * 119.99863 * 5.30979 * 9 8 7 11 11 N 1.34776 * 120.00215 * 185.31783 * 9 8 7 12 12 C 1.46505 * 120.00033 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46837 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00227 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00047 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00488 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47227 * 90.00008 * 17 15 13 19 19 H 1.48498 * 109.46984 * 210.00237 * 17 15 13 20 20 H 1.48501 * 109.46978 * 330.00068 * 17 15 13 21 21 C 1.38865 * 119.86487 * 0.02562 * 7 6 5 22 22 C 1.38116 * 119.92989 * 359.97438 * 21 7 6 23 23 H 1.09001 * 109.47092 * 169.05315 * 1 2 3 24 24 H 1.09006 * 109.47363 * 289.05504 * 1 2 3 25 25 H 1.09002 * 109.47348 * 49.05147 * 1 2 3 26 26 H 1.07993 * 119.96576 * 0.27566 * 5 4 2 27 27 H 1.07993 * 120.03281 * 179.97438 * 6 5 4 28 28 H 0.96993 * 120.00387 * 33.29099 * 8 7 6 29 29 H 0.96998 * 120.00151 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.46695 * 299.99565 * 12 11 9 31 31 H 1.08990 * 109.46960 * 59.99777 * 12 11 9 32 32 H 0.96992 * 120.00549 * 179.97438 * 16 15 13 33 33 H 1.08002 * 120.03526 * 180.02562 * 21 7 6 34 34 H 1.07993 * 119.96564 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3712 -1.9122 -1.8657 6 6 2.6875 -2.3543 -3.1354 7 6 2.8435 -1.4397 -4.1686 8 7 3.1645 -1.8844 -5.4562 9 6 3.9397 -1.1267 -6.2571 10 8 4.4392 -0.1041 -5.8292 11 7 4.1610 -1.5024 -7.5324 12 6 5.0032 -0.6784 -8.4031 13 6 5.0903 -1.3150 -9.7663 14 1 4.5700 -2.2404 -9.9644 15 6 5.8333 -0.7153 -10.7609 16 7 5.9090 -1.2705 -11.9507 17 14 6.7326 0.8858 -10.4185 18 1 8.0994 0.5889 -9.9195 19 1 6.8241 1.6796 -11.6702 20 1 5.9892 1.6617 -9.3936 21 6 2.6813 -0.0829 -3.9214 22 6 2.3650 0.3529 -2.6495 23 1 -0.3633 -1.0090 -0.1952 24 1 -0.3634 0.3355 0.9714 25 1 -0.3634 0.6735 -0.7762 26 1 2.2494 -2.6230 -1.0618 27 1 2.8134 -3.4101 -3.3245 28 1 2.8291 -2.7379 -5.7722 29 1 3.7627 -2.3183 -7.8737 30 1 4.5679 0.3168 -8.4936 31 1 6.0022 -0.6005 -7.9744 32 1 6.4314 -0.8484 -12.6506 33 1 2.8015 0.6308 -4.7231 34 1 2.2392 1.4079 -2.4566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488516801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:06 Heat of formation + Delta-G solvation = -36.350925 kcal Electronic energy + Delta-G solvation = -18826.027526 eV Core-core repulsion = 15657.870704 eV Total energy + Delta-G solvation = -3168.156822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41034 -38.50494 -35.87475 -34.85323 -34.33165 -32.45320 -31.02593 -29.90561 -28.97936 -27.65014 -23.48799 -22.89264 -21.80310 -20.48485 -18.54066 -18.21460 -17.63452 -16.48933 -16.41358 -15.54774 -14.99527 -14.91115 -14.83802 -14.29153 -14.23790 -13.87770 -13.46217 -13.30040 -13.27162 -12.96848 -12.52781 -12.44470 -12.32926 -12.00882 -11.40822 -11.06411 -10.84455 -10.49354 -10.36813 -10.03241 -9.76133 -9.55284 -9.01061 -8.86038 -8.74378 -8.39498 -8.03780 -6.27172 -4.30262 0.81816 1.33792 1.74641 2.51846 2.90923 3.23789 3.31289 3.35558 3.39298 3.67702 3.86261 4.28637 4.62097 4.75573 4.86808 4.92010 5.00355 5.08263 5.28466 5.43364 5.56226 5.69434 5.86198 5.96801 6.22751 6.26496 6.51888 6.61736 6.98136 6.99913 7.05569 7.19724 7.37489 8.15554 8.46582 8.69860 8.91429 9.32238 10.84576 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.003044 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.627851 B = 9195.688953 C = 9664.726055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.332 4.668 3 O -0.861 6.861 4 C -0.491 4.491 5 C -0.023 4.023 6 C -0.174 4.174 7 C 0.220 3.780 8 N -0.694 5.694 9 C 0.691 3.309 10 O -0.581 6.581 11 N -0.713 5.713 12 C 0.237 3.763 13 C -0.546 4.546 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.139 4.139 22 C -0.031 4.031 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.407 0.593 29 H 0.395 0.605 30 H 0.026 0.974 31 H 0.022 0.978 32 H 0.269 0.731 33 H 0.140 0.860 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 -6.067 24.001 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.856 6.856 4 C -0.589 4.589 5 C -0.043 4.043 6 C -0.197 4.197 7 C 0.122 3.878 8 N -0.342 5.342 9 C 0.391 3.609 10 O -0.458 6.458 11 N -0.364 5.364 12 C 0.114 3.886 13 C -0.584 4.584 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.161 4.161 22 C -0.051 4.051 23 H 0.128 0.872 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.243 0.757 29 H 0.229 0.771 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.089 -4.807 24.754 27.160 hybrid contribution -0.667 1.170 -2.276 2.645 sum -10.756 -3.637 22.477 25.182 Atomic orbital electron populations 1.27795 1.23071 1.07774 1.06995 1.69242 0.85678 0.99578 0.92558 1.93116 1.73051 1.37274 1.82192 1.27400 1.15846 0.99610 1.16031 1.20528 0.94340 0.93409 0.96050 1.20951 1.07118 0.99307 0.92280 1.17763 0.92917 0.93332 0.83768 1.42930 1.53600 1.24148 1.13473 1.16149 0.79526 0.83509 0.81732 1.90918 1.54610 1.25754 1.74567 1.45474 1.53402 1.28614 1.08938 1.19457 0.89425 0.90956 0.88724 1.21045 1.33081 1.10790 0.93457 0.90202 1.24769 0.95592 0.97513 0.94625 1.69865 1.40405 1.39642 1.02862 0.86819 0.80857 0.83706 0.78336 1.19752 1.20812 1.18473 1.21361 1.01302 0.95100 0.98345 1.20960 0.93131 0.99336 0.91692 0.87203 0.87960 0.90102 0.84466 0.85148 0.75733 0.77109 0.95607 0.96037 0.92148 0.84202 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.12 10.70 101.05 1.08 -2.04 16 2 S 1.33 10.05 14.18 -107.50 -1.52 8.52 16 3 O -0.86 -12.76 16.89 -35.23 -0.60 -13.35 16 4 C -0.49 -5.19 5.61 -39.55 -0.22 -5.41 16 5 C -0.02 -0.19 9.74 -39.61 -0.39 -0.58 16 6 C -0.17 -1.79 9.96 -39.39 -0.39 -2.18 16 7 C 0.22 3.09 6.28 -83.69 -0.53 2.56 16 8 N -0.69 -9.88 5.35 -14.22 -0.08 -9.95 16 9 C 0.69 13.28 8.30 -86.92 -0.72 12.56 16 10 O -0.58 -13.47 14.03 5.29 0.07 -13.40 16 11 N -0.71 -14.12 5.55 -66.41 -0.37 -14.49 16 12 C 0.24 5.76 4.50 -5.19 -0.02 5.73 16 13 C -0.55 -14.75 9.83 -34.44 -0.34 -15.09 16 14 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 17 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.14 -2.23 8.65 -39.39 -0.34 -2.57 16 22 C -0.03 -0.45 9.43 -39.61 -0.37 -0.82 16 23 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.41 4.22 8.83 -40.82 -0.36 3.86 16 29 H 0.40 6.70 8.34 -40.82 -0.34 6.35 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 31 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.14 2.57 6.41 -52.49 -0.34 2.24 16 34 H 0.13 1.91 7.45 -52.49 -0.39 1.52 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -38.72 309.17 -7.96 -46.68 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.89 Total: 5.77 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.34 Total: -5.71 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.33 Total: -49.86 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.52 Total: -26.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 10.05 SS G_CDS: -1.52 Total: 8.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -38.72 -7.96 -46.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488516801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.327 kcal (2) G-P(sol) polarization free energy of solvation -38.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds