Wall clock time and date at job start Tue Mar 31 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42094 * 109.47008 * 2 1 4 4 C 1.76198 * 102.99458 * 109.05495 * 2 1 3 5 5 C 1.38282 * 119.93359 * 90.00485 * 4 2 1 6 6 C 1.38108 * 120.07319 * 179.97438 * 5 4 2 7 7 C 1.38861 * 119.93057 * 359.97438 * 6 5 4 8 8 N 1.39954 * 120.07216 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00053 * 144.93596 * 8 7 6 10 10 O 1.21588 * 119.99680 * 4.63700 * 9 8 7 11 11 N 1.34774 * 120.00227 * 184.64051 * 9 8 7 12 12 C 1.46496 * 120.00207 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47017 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00305 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99733 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46947 * 89.99819 * 17 15 13 19 19 H 1.48500 * 109.47102 * 210.00023 * 17 15 13 20 20 H 1.48499 * 109.46697 * 329.99768 * 17 15 13 21 21 C 1.38864 * 119.86257 * 0.27603 * 7 6 5 22 22 C 1.38115 * 119.92760 * 359.44431 * 21 7 6 23 23 H 1.09007 * 109.47279 * 310.94729 * 1 2 3 24 24 H 1.09005 * 109.46732 * 70.94434 * 1 2 3 25 25 H 1.08998 * 109.47450 * 190.94319 * 1 2 3 26 26 H 1.08000 * 119.96031 * 359.97438 * 5 4 2 27 27 H 1.08000 * 120.03586 * 179.97438 * 6 5 4 28 28 H 0.96995 * 119.99667 * 324.93705 * 8 7 6 29 29 H 0.97002 * 119.99598 * 0.02562 * 11 9 8 30 30 H 1.09007 * 109.47209 * 299.99670 * 12 11 9 31 31 H 1.08993 * 109.47038 * 59.99512 * 12 11 9 32 32 H 0.96995 * 119.99998 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.04106 * 179.70312 * 21 7 6 34 34 H 1.07999 * 119.97115 * 180.25569 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2102 -0.5605 1.6228 5 6 2.3655 -1.9127 1.8670 6 6 2.6766 -2.3552 3.1378 7 6 2.8340 -1.4406 4.1707 8 7 3.1487 -1.8857 5.4597 9 6 3.9543 -1.1483 6.2494 10 8 4.3395 -0.0575 5.8752 11 7 4.3330 -1.6200 7.4538 12 6 5.2091 -0.8187 8.3119 13 6 5.4794 -1.5666 9.5920 14 1 5.0426 -2.5415 9.7503 15 6 6.2852 -1.0067 10.5606 16 7 6.8184 0.1799 10.3672 17 14 6.6208 -1.9341 12.1470 18 1 7.8310 -2.7782 11.9804 19 1 6.8415 -0.9645 13.2500 20 1 5.4564 -2.7967 12.4718 21 6 2.6723 -0.0837 3.9235 22 6 2.3669 0.3529 2.6492 23 1 -0.3634 0.6735 0.7762 24 1 -0.3633 0.3355 -0.9714 25 1 -0.3634 -1.0089 0.1951 26 1 2.2433 -2.6235 1.0631 27 1 2.7973 -3.4114 3.3280 28 1 2.7869 -2.7250 5.7847 29 1 4.0259 -2.4905 7.7521 30 1 6.1503 -0.6301 7.7952 31 1 4.7242 0.1301 8.5412 32 1 7.3850 0.5739 11.0488 33 1 2.7893 0.6298 4.7257 34 1 2.2451 1.4083 2.4553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488516802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:09 Heat of formation + Delta-G solvation = -39.515592 kcal Electronic energy + Delta-G solvation = -18761.318962 eV Core-core repulsion = 15593.024910 eV Total energy + Delta-G solvation = -3168.294052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29161 -38.39063 -35.83081 -34.72578 -34.20572 -32.43097 -30.95034 -29.73972 -28.91352 -27.07162 -23.52561 -22.86621 -22.02898 -20.36703 -18.40420 -18.11563 -17.58072 -16.39624 -16.07681 -15.42256 -14.98143 -14.92004 -14.71243 -14.27801 -14.17268 -13.82527 -13.45861 -13.22233 -13.16935 -12.81116 -12.46290 -12.05908 -12.01250 -11.96448 -11.33755 -11.02126 -10.95502 -10.42948 -10.37466 -10.25464 -9.54693 -9.45916 -8.93175 -8.82907 -8.68612 -8.23334 -7.86510 -6.21804 -4.29454 0.87797 1.40468 1.79704 2.56964 3.02735 3.20866 3.27425 3.29739 3.47803 3.74433 3.92593 4.26834 4.77192 4.83671 4.93980 4.95575 5.04019 5.14453 5.35702 5.50619 5.64994 5.72710 5.93161 6.04286 6.30940 6.36757 6.61193 6.93134 7.08340 7.30615 7.42034 7.45254 7.73697 7.92055 8.59548 8.75597 9.08215 9.37479 10.88332 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.053992 B = 0.002789 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.473927 B =10037.667177 C =10376.633524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.332 4.668 3 O -0.860 6.860 4 C -0.490 4.490 5 C -0.026 4.026 6 C -0.174 4.174 7 C 0.218 3.782 8 N -0.697 5.697 9 C 0.689 3.311 10 O -0.579 6.579 11 N -0.719 5.719 12 C 0.265 3.735 13 C -0.545 4.545 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.138 4.138 22 C -0.033 4.033 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.405 0.595 29 H 0.389 0.611 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.145 0.855 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -9.540 -20.054 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.856 6.856 4 C -0.589 4.589 5 C -0.045 4.045 6 C -0.196 4.196 7 C 0.120 3.880 8 N -0.344 5.344 9 C 0.389 3.611 10 O -0.456 6.456 11 N -0.371 5.371 12 C 0.144 3.856 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.160 4.160 22 C -0.053 4.053 23 H 0.099 0.901 24 H 0.120 0.880 25 H 0.128 0.872 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.240 0.760 29 H 0.222 0.778 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.799 -8.094 -20.876 25.308 hybrid contribution -0.894 -0.023 3.117 3.242 sum -12.693 -8.117 -17.759 23.289 Atomic orbital electron populations 1.27798 1.23151 1.07738 1.06963 1.69226 0.85645 0.99583 0.92643 1.93115 1.73019 1.37263 1.82217 1.27392 1.15829 0.99610 1.16026 1.20513 0.94602 0.93400 0.96035 1.20966 1.07079 0.99267 0.92335 1.17784 0.93087 0.93299 0.83818 1.42956 1.51513 1.26224 1.13715 1.16191 0.79313 0.84218 0.81397 1.90905 1.60369 1.20454 1.73893 1.45797 1.52568 1.22673 1.16032 1.19083 0.88354 0.90747 0.87371 1.21185 1.31658 1.04222 1.01285 0.91850 1.24953 0.95241 0.94983 0.98815 1.69974 1.31735 1.15451 1.34959 0.86382 0.78704 0.79393 0.82233 1.20405 1.20947 1.19755 1.21528 1.00745 0.95329 0.98383 1.20992 0.93214 0.99332 0.91762 0.90107 0.87989 0.87239 0.84551 0.85248 0.75963 0.77827 0.95427 0.95449 0.92331 0.83689 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.30 10.70 101.05 1.08 -2.22 16 2 S 1.33 10.63 14.18 -107.50 -1.52 9.10 16 3 O -0.86 -13.15 16.89 -35.23 -0.60 -13.74 16 4 C -0.49 -5.45 5.61 -39.55 -0.22 -5.67 16 5 C -0.03 -0.23 9.74 -39.61 -0.39 -0.61 16 6 C -0.17 -1.88 9.97 -39.40 -0.39 -2.27 16 7 C 0.22 3.20 6.29 -83.69 -0.53 2.68 16 8 N -0.70 -10.38 5.34 -14.22 -0.08 -10.45 16 9 C 0.69 13.93 8.41 -86.92 -0.73 13.20 16 10 O -0.58 -14.19 13.79 5.29 0.07 -14.12 16 11 N -0.72 -14.87 5.55 -66.42 -0.37 -15.24 16 12 C 0.27 6.97 5.43 -5.19 -0.03 6.94 16 13 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 17 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.14 -2.31 8.69 -39.39 -0.34 -2.65 16 22 C -0.03 -0.50 9.44 -39.61 -0.37 -0.87 16 23 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.41 4.41 8.84 -40.82 -0.36 4.05 16 29 H 0.39 6.69 8.34 -40.82 -0.34 6.35 16 30 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.15 2.81 6.24 -52.49 -0.33 2.48 16 34 H 0.13 1.99 7.45 -52.49 -0.39 1.60 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -38.68 312.53 -8.32 -47.00 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.91 Total: 7.05 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.34 Total: -4.72 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.29 Total: -50.89 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.52 Total: -27.86 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 10.63 SS G_CDS: -1.52 Total: 9.10 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -38.68 -8.32 -47.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488516802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.482 kcal (2) G-P(sol) polarization free energy of solvation -38.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds