Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99854 * 2 1 4 4 N 1.46499 * 109.47144 * 125.00462 * 3 2 1 5 5 C 1.46494 * 120.00318 * 274.99849 * 4 3 2 6 6 C 1.50701 * 109.47121 * 275.00055 * 5 4 3 7 7 H 1.07996 * 119.99796 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99717 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00258 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47286 * 89.99975 * 10 8 6 12 12 H 1.48499 * 109.47651 * 209.99864 * 10 8 6 13 13 H 1.48506 * 109.47125 * 330.00219 * 10 8 6 14 14 S 1.65607 * 119.99969 * 94.99870 * 4 3 2 15 15 O 1.42097 * 106.40132 * 336.45937 * 14 4 3 16 16 O 1.42107 * 106.39904 * 203.54209 * 14 4 3 17 17 C 1.76199 * 107.21942 * 90.00109 * 14 4 3 18 18 C 1.38224 * 119.61932 * 149.99999 * 17 14 4 19 19 C 1.38626 * 119.16182 * 179.97438 * 18 17 14 20 20 C 1.38667 * 118.42033 * 0.02562 * 19 18 17 21 21 C 1.38180 * 119.16467 * 359.97438 * 20 19 18 22 22 N 1.31849 * 119.61614 * 329.72537 * 17 14 4 23 23 H 1.07998 * 119.99843 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99753 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99843 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47648 * 5.00247 * 3 2 1 27 27 H 1.09007 * 109.47135 * 245.00216 * 3 2 1 28 28 H 1.09005 * 109.46759 * 34.99436 * 5 4 3 29 29 H 1.09001 * 109.47722 * 154.99770 * 5 4 3 30 30 H 0.97002 * 119.99926 * 180.02562 * 9 8 6 31 31 H 1.08000 * 120.41730 * 359.95303 * 18 17 14 32 32 H 1.08001 * 120.78633 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.41843 * 180.02562 * 20 19 18 34 34 H 1.08004 * 119.62137 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5287 1.7620 2.4522 6 6 2.5994 3.2645 2.5449 7 1 2.9555 3.8412 1.7042 8 6 2.2093 3.9027 3.7032 9 7 1.7750 3.2004 4.7268 10 14 2.2975 5.7651 3.8184 11 1 1.0132 6.3510 3.3576 12 1 2.5456 6.1628 5.2275 13 1 3.4040 6.2622 2.9616 14 16 4.5714 0.8758 0.9171 15 8 4.5923 0.0262 -0.2217 16 8 5.0505 0.4762 2.1939 17 6 5.4769 2.3215 0.4760 18 6 6.8102 2.4256 0.8254 19 6 7.5137 3.5670 0.4731 20 6 6.8467 4.5657 -0.2201 21 6 5.5127 4.3912 -0.5350 22 7 4.8763 3.2892 -0.1883 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9315 28 1 1.4985 1.4370 2.5982 29 1 3.1615 1.3203 3.2220 30 1 1.5003 3.6496 5.5415 31 1 7.2976 1.6280 1.3663 32 1 8.5565 3.6757 0.7324 33 1 7.3637 5.4683 -0.5110 34 1 4.9861 5.1641 -1.0751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490074982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = -11.083570 kcal Electronic energy + Delta-G solvation = -20479.915874 eV Core-core repulsion = 17312.854727 eV Total energy + Delta-G solvation = -3167.061147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.87797 -36.72728 -36.27535 -35.35729 -33.16133 -32.48649 -31.82416 -31.35350 -27.43015 -24.87462 -23.95179 -23.58403 -22.17521 -19.62110 -18.88725 -17.48415 -16.93696 -16.38001 -16.13256 -15.94398 -15.62491 -14.61555 -14.59577 -14.40975 -13.84165 -13.54985 -13.18471 -12.97008 -12.45075 -12.35167 -12.11408 -11.74039 -11.57133 -11.27196 -11.15719 -10.97420 -10.80809 -10.71266 -10.49356 -10.08619 -9.91362 -9.75982 -9.37548 -9.32911 -8.97918 -8.45752 -8.04818 -6.06932 -4.11751 0.77282 1.00412 1.29656 2.68747 3.25886 3.32607 3.34404 3.47542 3.68985 4.14410 4.39527 4.57280 4.80973 4.95171 5.03776 5.25574 5.26633 5.29193 5.40691 5.59291 5.62688 5.75932 5.89861 6.05160 6.24055 6.40195 6.55773 6.58946 7.04259 7.13422 7.38804 7.47982 7.66182 7.81745 7.91873 8.20479 8.95200 9.53579 11.01455 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.010030 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.323059 B = 2790.924936 C = 4261.186319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.161 3.839 4 N -0.960 5.960 5 C 0.244 3.756 6 C -0.538 4.538 7 H 0.069 0.931 8 C 0.063 3.937 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.276 1.276 14 S 2.695 3.305 15 O -0.967 6.967 16 O -0.950 6.950 17 C -0.418 4.418 18 C -0.093 4.093 19 C -0.091 4.091 20 C -0.133 4.133 21 C 0.082 3.918 22 N -0.386 5.386 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 0.301 -10.130 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.181 4.181 3 C 0.035 3.965 4 N -0.800 5.800 5 C 0.122 3.878 6 C -0.577 4.577 7 H 0.087 0.913 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.201 1.201 14 S 2.780 3.220 15 O -0.957 6.957 16 O -0.940 6.940 17 C -0.636 4.636 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.153 4.153 21 C -0.078 4.078 22 N -0.095 5.095 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.011 -0.587 -10.049 11.725 hybrid contribution 1.094 2.184 0.387 2.474 sum 7.105 1.598 -9.662 12.100 Atomic orbital electron populations 1.23766 0.95782 1.01531 1.01478 1.23484 0.96362 0.99371 0.98888 1.20198 0.92970 0.95223 0.88107 1.57102 1.22929 1.82083 1.17837 1.19296 0.97228 0.95037 0.76246 1.21663 1.44092 0.92083 0.99871 0.91315 1.24934 0.95179 0.98224 0.95578 1.69935 1.43448 1.35435 1.04139 0.86599 0.78360 0.85837 0.77205 1.20545 1.21202 1.20111 1.02196 0.73150 0.73409 0.73227 1.93554 1.86743 1.62838 1.52589 1.93592 1.80400 1.80011 1.39968 1.34044 1.04955 1.18570 1.06063 1.21837 0.93958 0.99185 0.96435 1.21608 1.00565 0.93234 0.96381 1.22330 0.96324 0.99418 0.97198 1.23025 0.92091 0.95463 0.97266 1.67798 1.36399 0.99582 1.05762 0.88382 0.88943 0.87555 0.89364 0.90262 0.93664 0.93017 0.92697 0.83684 0.84137 0.84407 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.01 0.42 -2.36 16 2 C -0.16 -2.70 9.84 -36.03 -0.35 -3.05 16 3 C 0.16 2.94 5.78 -5.20 -0.03 2.91 16 4 N -0.96 -20.41 2.69 -116.95 -0.32 -20.72 16 5 C 0.24 6.12 5.43 -5.20 -0.03 6.09 16 6 C -0.54 -14.39 9.38 -34.44 -0.32 -14.72 16 7 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 10 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 S 2.70 55.41 5.61 -107.50 -0.60 54.81 16 15 O -0.97 -19.98 16.99 -57.17 -0.97 -20.95 16 16 O -0.95 -21.68 16.20 -57.17 -0.93 -22.60 16 17 C -0.42 -7.92 6.77 -17.55 -0.12 -8.04 16 18 C -0.09 -1.50 9.57 -39.44 -0.38 -1.87 16 19 C -0.09 -1.18 10.18 -39.28 -0.40 -1.58 16 20 C -0.13 -1.64 10.11 -39.44 -0.40 -2.04 16 21 C 0.08 1.21 11.18 -17.55 -0.20 1.01 16 22 N -0.39 -7.08 10.24 -12.45 -0.13 -7.21 16 23 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 24 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 25 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 26 H 0.09 1.60 7.76 -51.93 -0.40 1.20 16 27 H 0.08 1.34 7.61 -51.92 -0.40 0.95 16 28 H 0.05 1.17 8.11 -51.93 -0.42 0.75 16 29 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.15 2.03 7.94 -52.49 -0.42 1.61 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.16 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -32.93 316.49 -8.43 -41.37 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.07 Total: 1.34 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -1.91 Total: -21.99 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.29 Total: -52.94 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.90 Total: -43.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 55.41 SS G_CDS: -0.60 Total: 54.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.93 -8.43 -41.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490074982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.284 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds