Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34656 * 117.00130 * 2 1 4 4 O 1.21517 * 119.99736 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00226 * 180.27791 * 3 2 1 6 6 C 1.39955 * 120.00270 * 174.06697 * 5 3 2 7 7 C 1.38989 * 119.99522 * 335.20172 * 6 5 3 8 8 C 1.37919 * 120.03869 * 179.72244 * 7 6 5 9 9 C 1.39201 * 120.02339 * 0.55302 * 8 7 6 10 10 N 1.39396 * 120.00352 * 179.74474 * 9 8 7 11 11 C 1.34770 * 119.99794 * 215.07073 * 10 9 8 12 12 O 1.21789 * 120.00333 * 355.29420 * 11 10 9 13 13 C 1.41678 * 119.99832 * 175.28580 * 11 10 9 14 14 H 1.08004 * 120.00020 * 0.02562 * 13 11 10 15 15 C 1.40140 * 120.00089 * 180.02562 * 13 11 10 16 16 N 1.30627 * 119.99923 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00214 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46767 * 60.00111 * 17 15 13 19 19 H 1.48495 * 109.47114 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46960 * 299.99959 * 17 15 13 21 21 C 1.39129 * 119.98814 * 359.72001 * 9 8 7 22 22 C 1.38081 * 119.96686 * 0.02562 * 21 9 8 23 23 F 1.35098 * 120.01233 * 179.97438 * 22 21 9 24 24 H 1.09000 * 109.47069 * 299.99850 * 1 2 3 25 25 H 1.09004 * 109.47506 * 59.99812 * 1 2 3 26 26 H 1.08994 * 109.47557 * 179.97438 * 1 2 3 27 27 H 0.96999 * 119.99455 * 354.06761 * 5 3 2 28 28 H 1.08008 * 119.97779 * 359.97438 * 7 6 5 29 29 H 1.08007 * 119.98772 * 180.25120 * 8 7 6 30 30 H 0.97005 * 119.99802 * 35.07377 * 10 9 8 31 31 H 0.97007 * 120.00285 * 179.97438 * 16 15 13 32 32 H 1.07999 * 120.01721 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 0.0005 5 7 3.4092 1.2703 -0.0057 6 6 4.0444 2.5111 -0.1310 7 6 3.3866 3.5695 -0.7466 8 6 4.0096 4.7942 -0.8655 9 6 5.3022 4.9682 -0.3791 10 7 5.9334 6.2048 -0.5042 11 6 7.2618 6.2640 -0.7239 12 8 7.9246 5.2423 -0.7277 13 6 7.8872 7.5150 -0.9505 14 1 7.2995 8.4211 -0.9468 15 6 9.2684 7.5766 -1.1794 16 7 9.9792 6.4806 -1.1843 17 14 10.0931 9.2260 -1.4775 18 1 9.8855 10.1036 -0.2976 19 1 11.5480 9.0203 -1.6921 20 1 9.5013 9.8652 -2.6801 21 6 5.9638 3.9080 0.2323 22 6 5.3377 2.6835 0.3557 23 9 5.9795 1.6532 0.9488 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9376 0.4611 0.0771 28 1 2.3855 3.4338 -1.1286 29 1 3.4961 5.6172 -1.3405 30 1 5.4166 7.0226 -0.4332 31 1 10.9352 6.5232 -1.3432 32 1 6.9665 4.0426 0.6102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495475151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -124.881753 kcal Electronic energy + Delta-G solvation = -21268.129164 eV Core-core repulsion = 17529.920181 eV Total energy + Delta-G solvation = -3738.208983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.51833 -40.85326 -39.20207 -37.66673 -36.33128 -34.92045 -33.09293 -32.36118 -30.11175 -28.87036 -27.54316 -26.23662 -23.31707 -22.27622 -21.29076 -20.08713 -19.01191 -17.78088 -17.59194 -17.05927 -16.60106 -16.16634 -15.79056 -15.40618 -15.13467 -14.85129 -14.18169 -14.14032 -13.86531 -13.39639 -13.19692 -12.70079 -12.67760 -12.29731 -12.00973 -11.85403 -11.41869 -11.38467 -11.13838 -10.98147 -10.70651 -10.64064 -10.42223 -10.14247 -9.12631 -8.74244 -8.38772 -7.76173 -7.01331 -6.42772 -4.96759 1.49758 1.75356 2.01054 2.72804 3.04419 3.10094 3.11852 3.92844 4.03412 4.08911 4.39935 4.41102 4.72517 4.90969 4.99192 5.17667 5.29191 5.53384 5.65920 5.69629 5.83524 6.04591 6.15080 6.45774 6.62276 6.65481 6.92152 7.17570 7.24708 7.28816 7.76859 7.94679 8.07344 8.16142 8.74498 9.19475 10.31659 10.50973 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.046805 B = 0.003486 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.083298 B = 8029.598341 C = 8520.651128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.647 3.353 4 O -0.556 6.556 5 N -0.637 5.637 6 C 0.070 3.930 7 C -0.080 4.080 8 C -0.165 4.165 9 C 0.211 3.789 10 N -0.697 5.697 11 C 0.541 3.459 12 O -0.566 6.566 13 C -0.536 4.536 14 H 0.071 0.929 15 C 0.088 3.912 16 N -0.746 5.746 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.147 4.147 22 C 0.095 3.905 23 F -0.142 7.142 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.416 0.584 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.396 0.604 31 H 0.274 0.726 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 -7.927 1.481 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.401 3.599 4 O -0.444 6.444 5 N -0.288 5.288 6 C -0.024 4.024 7 C -0.100 4.100 8 C -0.188 4.188 9 C 0.110 3.890 10 N -0.340 5.340 11 C 0.351 3.649 12 O -0.450 6.450 13 C -0.571 4.571 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.373 5.373 17 Si 0.738 3.262 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.169 4.169 22 C 0.073 3.927 23 F -0.121 7.121 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.252 0.748 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.516 -8.282 1.435 15.917 hybrid contribution 0.368 0.628 -0.015 0.728 sum -13.148 -7.654 1.420 15.280 Atomic orbital electron populations 1.23220 0.74107 1.03528 1.02929 1.86244 1.24406 1.30824 1.87021 1.18021 0.83046 0.82318 0.76560 1.90967 1.64483 1.34327 1.54600 1.41630 1.03305 1.09406 1.74449 1.17289 0.92200 0.86091 1.06857 1.20910 1.00676 0.91051 0.97404 1.20910 0.95658 0.97884 1.04309 1.17747 0.91042 0.88038 0.92188 1.44195 1.11074 1.04392 1.74380 1.17077 0.78306 0.91271 0.78236 1.90650 1.61593 1.36486 1.56223 1.19993 0.93439 0.93025 1.50687 0.91065 1.25771 0.97350 0.97779 0.92694 1.69992 1.07251 1.28351 1.31676 0.86313 0.78188 0.81930 0.79741 1.19000 1.20325 1.19022 1.21336 1.02917 0.90587 1.02057 1.17201 0.90130 0.85727 0.99625 1.91434 1.81669 1.57212 1.81786 0.91684 0.91674 0.87906 0.74762 0.83325 0.85295 0.77038 0.91472 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -4.23 10.62 -40.37 -0.43 -4.66 16 3 C 0.65 9.13 8.55 54.05 0.46 9.59 16 4 O -0.56 -9.03 13.29 -19.28 -0.26 -9.29 16 5 N -0.64 -9.04 5.32 -14.14 -0.08 -9.12 16 6 C 0.07 1.18 6.45 -83.49 -0.54 0.64 16 7 C -0.08 -1.34 8.71 -39.42 -0.34 -1.68 16 8 C -0.17 -2.84 9.96 -39.34 -0.39 -3.23 16 9 C 0.21 4.29 6.30 -83.73 -0.53 3.77 16 10 N -0.70 -15.08 5.30 -12.42 -0.07 -15.14 16 11 C 0.54 14.53 7.41 -14.95 -0.11 14.42 16 12 O -0.57 -17.13 12.29 5.11 0.06 -17.07 16 13 C -0.54 -14.16 9.31 -37.56 -0.35 -14.51 16 14 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 15 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 16 N -0.75 -21.05 11.73 55.56 0.65 -20.40 16 17 Si 0.91 18.91 29.56 -169.99 -5.02 13.88 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.15 -3.12 8.66 -39.31 -0.34 -3.46 16 22 C 0.10 1.78 7.30 -39.26 -0.29 1.49 16 23 F -0.14 -2.54 16.80 2.25 0.04 -2.50 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.42 4.96 8.55 -40.82 -0.35 4.61 16 28 H 0.15 2.40 5.78 -52.48 -0.30 2.10 16 29 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 30 H 0.40 7.21 8.78 -40.82 -0.36 6.85 16 31 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 32 H 0.16 3.93 6.21 -52.49 -0.33 3.60 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -32.79 292.86 -4.71 -37.50 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -2.57 Total: 11.65 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -1.45 Total: 10.74 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.51 Total: -44.66 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.62 Total: -31.01 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.79 -4.71 -37.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495475151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.380 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds