Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38189 * 126.45486 * 293.55754 * 3 2 1 5 5 N 1.34431 * 108.38923 * 179.74976 * 4 3 2 6 6 H 0.96997 * 125.40700 * 180.23020 * 5 4 3 7 7 C 1.37751 * 109.18517 * 0.37959 * 5 4 3 8 8 C 1.46753 * 125.84866 * 179.87988 * 7 5 4 9 9 O 1.21680 * 119.99723 * 179.68929 * 8 7 5 10 10 N 1.34774 * 119.99981 * 359.69770 * 8 7 5 11 11 C 1.39360 * 119.99798 * 174.98993 * 10 8 7 12 12 C 1.38633 * 119.58346 * 174.24002 * 11 10 8 13 13 C 1.40790 * 118.79457 * 180.02562 * 12 11 10 14 14 C 1.41547 * 120.99713 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99926 * 152.47826 * 14 13 12 16 16 C 1.40036 * 119.99744 * 332.47877 * 14 13 12 17 17 N 1.30743 * 119.99643 * 341.12555 * 16 14 13 18 18 Si 1.86799 * 120.00083 * 161.13071 * 16 14 13 19 19 H 1.48499 * 109.46914 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46966 * 119.99630 * 18 16 14 21 21 H 1.48490 * 109.47026 * 239.99794 * 18 16 14 22 22 C 1.41184 * 118.01043 * 359.97438 * 13 12 11 23 23 C 1.37581 * 119.01931 * 0.02562 * 22 13 12 24 24 N 1.32079 * 121.11649 * 0.02562 * 23 22 13 25 25 C 1.36437 * 108.29849 * 359.62337 * 7 5 4 26 26 H 1.08000 * 125.80507 * 0.02562 * 4 3 2 27 27 H 0.97000 * 120.00309 * 354.98102 * 10 8 7 28 28 H 1.07999 * 120.59821 * 0.03697 * 12 11 10 29 29 H 0.96996 * 119.99824 * 179.97438 * 17 16 14 30 30 H 1.08001 * 120.48678 * 179.97438 * 22 13 12 31 31 H 1.08000 * 119.44211 * 179.97438 * 23 22 13 32 32 H 1.07999 * 126.48461 * 180.25146 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3893 -0.4432 1.0189 5 7 4.6672 -0.2811 0.6345 6 1 5.4468 -0.5156 1.1620 7 6 4.6939 0.2738 -0.6260 8 6 5.8999 0.6075 -1.3928 9 8 5.7993 1.0913 -2.5047 10 7 7.1188 0.3779 -0.8654 11 6 8.2620 0.5965 -1.6319 12 6 9.5125 0.4736 -1.0462 13 6 10.6562 0.6986 -1.8357 14 6 11.9555 0.5863 -1.2854 15 1 12.7887 0.3189 -1.9184 16 6 12.1604 0.8220 0.0796 17 7 11.2714 1.4887 0.7685 18 14 13.7040 0.1842 0.9162 19 1 14.5447 -0.5325 -0.0762 20 1 14.4690 1.3252 1.4800 21 1 13.3258 -0.7467 2.0095 22 6 10.4684 1.0395 -3.1928 23 6 9.1875 1.1380 -3.6852 24 7 8.1400 0.9200 -2.9108 25 6 3.4071 0.4549 -1.0417 26 1 3.0604 -0.8548 1.9616 27 1 7.2003 0.0607 0.0476 28 1 9.6075 0.2099 -0.0032 29 1 11.4132 1.6517 1.7141 30 1 11.3178 1.2212 -3.8347 31 1 9.0360 1.3988 -4.7222 32 1 3.0900 0.8670 -1.9882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532433668.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = 76.346308 kcal Electronic energy + Delta-G solvation = -19943.873350 eV Core-core repulsion = 16677.452247 eV Total energy + Delta-G solvation = -3266.421104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70452 -39.43656 -37.73597 -36.47301 -34.53242 -33.91283 -31.69595 -30.72742 -30.05140 -28.45982 -26.09833 -23.63232 -23.00483 -22.10732 -20.95433 -20.24786 -18.99495 -17.83293 -16.66747 -16.25484 -15.66709 -15.34276 -15.26936 -14.37255 -14.27214 -14.14611 -14.05410 -13.67976 -13.43463 -13.19702 -13.04745 -12.79703 -12.69134 -12.38167 -12.06177 -11.56025 -11.34483 -10.99419 -10.41732 -10.29835 -9.93997 -9.76962 -9.43139 -9.32831 -8.57956 -8.10596 -7.89232 -7.18230 -6.96147 -4.70827 1.27053 1.64455 2.57146 2.60149 2.67701 2.75811 2.95350 3.00659 3.12981 3.32608 3.47258 3.69407 3.77322 4.07397 4.55277 4.63861 4.79177 5.01106 5.42169 5.54007 5.72456 5.85741 6.20637 6.35552 6.42697 6.53404 6.69380 6.79235 6.93010 6.96340 7.23465 7.29653 7.52400 7.61452 7.76643 8.04045 8.28207 8.54971 8.61935 8.67880 9.53179 9.96399 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.003634 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.155841 B = 7702.233295 C = 8663.041104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.295 3.705 3 C -0.137 4.137 4 C 0.089 3.911 5 N -0.523 5.523 6 H 0.427 0.573 7 C -0.035 4.035 8 C 0.571 3.429 9 O -0.462 6.462 10 N -0.656 5.656 11 C 0.338 3.662 12 C -0.240 4.240 13 C 0.147 3.853 14 C -0.459 4.459 15 H 0.084 0.916 16 C 0.081 3.919 17 N -0.786 5.786 18 Si 0.909 3.091 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.280 4.280 23 C 0.121 3.879 24 N -0.554 5.554 25 C -0.064 4.064 26 H 0.187 0.813 27 H 0.401 0.599 28 H 0.120 0.880 29 H 0.282 0.718 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 -4.540 5.963 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.020 4.020 3 C -0.148 4.148 4 C -0.055 4.055 5 N -0.117 5.117 6 H 0.265 0.735 7 C -0.147 4.147 8 C 0.355 3.645 9 O -0.330 6.330 10 N -0.302 5.302 11 C 0.113 3.887 12 C -0.266 4.266 13 C 0.139 3.861 14 C -0.490 4.490 15 H 0.102 0.898 16 C -0.139 4.139 17 N -0.412 5.412 18 Si 0.733 3.267 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.196 1.196 22 C -0.304 4.304 23 C -0.033 4.033 24 N -0.274 5.274 25 C -0.090 4.090 26 H 0.204 0.796 27 H 0.235 0.765 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.113 -4.025 5.015 11.153 hybrid contribution 2.434 -0.525 1.733 3.034 sum -6.679 -4.550 6.748 10.528 Atomic orbital electron populations 1.81260 1.11859 1.10687 1.08097 1.24657 0.91441 0.92595 0.93288 1.15379 0.84952 1.16189 0.98300 1.22218 0.82376 1.01466 0.99425 1.41858 1.08259 1.46899 1.14725 0.73457 1.20455 0.95948 1.10887 0.87364 1.17098 0.81377 0.79877 0.86121 1.90953 1.84998 1.39470 1.17595 1.43241 1.04697 1.66371 1.15843 1.18045 0.84052 0.97321 0.89256 1.21366 0.89936 1.13964 1.01324 1.17551 0.92973 0.85244 0.90321 1.19585 0.94224 1.41901 0.93324 0.89770 1.25939 0.98246 0.92182 0.97516 1.69800 1.34917 1.26959 1.09485 0.86250 0.81388 0.79537 0.79564 1.18213 1.19866 1.19610 1.21951 0.96810 1.13698 0.97891 1.21781 0.88059 0.96011 0.97401 1.67177 1.33862 1.22647 1.03668 1.21034 0.89223 0.99760 0.99014 0.79645 0.76483 0.86258 0.90721 0.87765 0.85618 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.07 18.54 41.84 0.78 -5.30 16 2 C 0.29 3.40 15.83 -22.47 -0.36 3.05 16 3 C -0.14 -1.36 5.97 -106.84 -0.64 -2.00 16 4 C 0.09 0.61 11.90 -16.43 -0.20 0.41 16 5 N -0.52 -4.05 5.92 -9.28 -0.05 -4.11 16 6 H 0.43 2.09 8.15 -40.82 -0.33 1.76 16 7 C -0.03 -0.42 6.99 -82.42 -0.58 -1.00 16 8 C 0.57 9.82 7.74 -12.82 -0.10 9.72 16 9 O -0.46 -9.98 15.15 5.21 0.08 -9.90 16 10 N -0.66 -11.38 5.38 -12.66 -0.07 -11.45 16 11 C 0.34 7.59 7.40 -154.78 -1.15 6.44 16 12 C -0.24 -5.66 8.60 -38.47 -0.33 -5.99 16 13 C 0.15 3.67 5.55 -106.55 -0.59 3.08 16 14 C -0.46 -11.22 9.09 -37.65 -0.34 -11.56 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.08 1.85 5.12 -17.34 -0.09 1.76 16 17 N -0.79 -18.38 11.30 55.55 0.63 -17.75 16 18 Si 0.91 16.95 29.60 -169.99 -5.03 11.91 16 19 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 C -0.28 -6.53 9.90 -38.70 -0.38 -6.92 16 23 C 0.12 2.77 11.15 -17.69 -0.20 2.57 16 24 N -0.55 -13.37 7.88 -12.54 -0.10 -13.47 16 25 C -0.06 -0.75 10.54 -39.08 -0.41 -1.17 16 26 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 27 H 0.40 5.24 7.79 -40.82 -0.32 4.93 16 28 H 0.12 2.74 6.56 -52.49 -0.34 2.39 16 29 H 0.28 5.92 8.29 -40.82 -0.34 5.58 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -32.24 301.79 -6.81 -39.05 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -2.24 Total: 8.06 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -5.35 Total: -1.60 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 1.18 Total: -52.08 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.24 -6.81 -39.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532433668.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.399 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds