Wall clock time and date at job start Tue Mar 31 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00036 * 2 1 4 4 H 1.48501 * 109.46986 * 270.00215 * 3 2 1 5 5 H 1.48501 * 109.47046 * 29.99621 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99632 * 3 2 1 7 7 C 1.37883 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00146 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99602 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00210 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47307 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47056 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99894 * 180.02562 * 13 12 11 15 15 O 1.21558 * 119.99947 * 0.02562 * 14 13 12 16 16 C 1.47785 * 119.99949 * 180.02562 * 14 13 12 17 17 C 1.39616 * 120.12898 * 0.26837 * 16 14 13 18 18 C 1.37895 * 119.86407 * 180.21481 * 17 16 14 19 19 C 1.38514 * 120.12871 * 359.51478 * 18 17 16 20 20 Cl 1.73606 * 119.86591 * 180.27825 * 19 18 17 21 21 C 1.38506 * 120.26659 * 0.25919 * 19 18 17 22 22 C 1.37896 * 120.13471 * 359.97438 * 21 19 18 23 23 H 0.96995 * 120.00251 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47304 * 60.00581 * 9 7 2 25 25 H 1.08994 * 109.47615 * 299.99903 * 9 7 2 26 26 H 1.00903 * 111.00519 * 303.95841 * 10 9 7 27 27 H 1.09002 * 109.46855 * 60.00526 * 11 10 9 28 28 H 1.09003 * 109.47543 * 300.00543 * 11 10 9 29 29 H 1.09002 * 109.46674 * 60.00488 * 12 11 10 30 30 H 1.08997 * 109.47063 * 300.00389 * 12 11 10 31 31 H 0.96996 * 120.00073 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.06753 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.93741 * 179.79878 * 18 17 16 34 34 H 1.08007 * 119.93552 * 180.02562 * 21 19 18 35 35 H 1.08004 * 120.06955 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0013 11 6 5.4697 -2.6182 0.0002 12 6 5.9411 -4.0738 0.0023 13 7 7.4056 -4.1128 0.0018 14 6 8.0481 -5.2976 0.0029 15 8 7.4125 -6.3337 0.0038 16 6 9.5255 -5.3370 0.0029 17 6 10.2582 -4.1485 0.0075 18 6 11.6364 -4.1916 0.0030 19 6 12.2939 -5.4108 0.0042 20 17 14.0294 -5.4571 0.0058 21 6 11.5724 -6.5931 0.0044 22 6 10.1938 -6.5627 0.0040 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8746 -0.6808 -0.8904 26 1 3.6261 -3.0945 0.7834 27 1 5.8473 -2.1132 0.8893 28 1 5.8460 -2.1153 -0.8907 29 1 5.5635 -4.5792 -0.8866 30 1 5.5649 -4.5762 0.8934 31 1 7.9128 -3.2860 0.0006 32 1 9.7466 -3.1974 0.0114 33 1 12.2044 -3.2730 0.0033 34 1 12.0906 -7.5407 0.0057 35 1 9.6322 -7.4853 0.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552779293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:39 Heat of formation + Delta-G solvation = -19.208616 kcal Electronic energy + Delta-G solvation = -18196.577053 eV Core-core repulsion = 15027.119871 eV Total energy + Delta-G solvation = -3169.457182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52544 -38.80502 -36.91530 -36.33448 -34.46863 -32.50392 -31.63806 -31.46698 -29.15291 -26.27139 -24.07680 -23.25893 -21.94405 -21.32311 -20.62995 -18.53033 -17.04839 -16.72686 -16.43630 -15.86412 -15.37963 -15.26801 -14.95301 -14.38663 -14.19593 -13.94395 -13.86464 -13.35834 -13.18777 -12.67730 -12.59807 -12.22656 -12.05451 -11.92568 -11.46053 -11.33855 -11.24522 -10.69197 -10.61835 -10.20466 -9.90072 -9.63203 -9.36834 -9.35795 -9.10497 -8.64546 -7.64181 -6.10856 -4.09724 0.21550 0.74923 1.57072 2.45705 2.90135 3.24156 3.31548 3.32190 3.36558 4.18433 4.29626 4.36322 4.38077 4.69503 4.81226 4.91015 5.05333 5.16457 5.21537 5.37683 5.39306 5.56785 5.64310 5.66993 5.78447 6.03298 6.09555 6.14072 6.30574 6.65397 6.91046 7.27100 7.49952 7.76321 7.97946 8.18259 8.56929 8.97186 9.49940 11.02296 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.002400 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.943922 B =11662.612164 C =12416.779168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.166 3.834 10 N -0.677 5.677 11 C 0.046 3.954 12 C 0.120 3.880 13 N -0.721 5.721 14 C 0.555 3.445 15 O -0.532 6.532 16 C -0.126 4.126 17 C -0.074 4.074 18 C -0.117 4.117 19 C -0.015 4.015 20 Cl -0.065 7.065 21 C -0.118 4.118 22 C -0.048 4.048 23 H 0.265 0.735 24 H -0.014 1.014 25 H 0.023 0.977 26 H 0.339 0.661 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.374 -9.297 0.883 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.308 5.308 11 C -0.085 4.085 12 C -0.004 4.004 13 N -0.372 5.372 14 C 0.342 3.658 15 O -0.410 6.410 16 C -0.129 4.129 17 C -0.093 4.093 18 C -0.136 4.136 19 C -0.041 4.041 20 Cl -0.036 7.036 21 C -0.137 4.137 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.003 0.997 25 H 0.041 0.959 26 H 0.157 0.843 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 27.808 -9.970 0.199 29.542 hybrid contribution 0.993 1.736 0.877 2.184 sum 28.801 -8.234 1.076 29.974 Atomic orbital electron populations 1.69896 1.06160 1.26969 1.50638 1.24920 0.94784 0.98991 0.94681 0.86804 0.80171 0.83805 0.78585 1.20110 1.21151 1.19330 1.21039 0.88799 0.94942 1.50954 0.90160 1.20009 0.96829 0.84452 0.94881 1.60378 1.03287 1.17363 1.49781 1.22077 0.91946 0.94002 1.00440 1.21431 0.77571 0.98041 1.03334 1.45891 1.08392 1.08117 1.74845 1.18132 0.86901 0.83888 0.76898 1.90806 1.67966 1.32760 1.49422 1.20141 0.93447 0.94399 1.04963 1.21323 0.93429 0.97867 0.96711 1.21020 0.94287 0.96990 1.01298 1.21219 0.84964 0.95285 1.02683 1.98394 1.09645 1.98895 1.96655 1.21085 0.93740 0.97523 1.01326 1.21288 0.93169 0.98142 0.94073 0.92558 0.99674 0.95879 0.84310 0.95644 0.91061 0.90087 0.91255 0.76624 0.84475 0.84154 0.84109 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.63 9.87 -34.44 -0.34 -14.97 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.17 3.89 4.51 -4.98 -0.02 3.87 16 10 N -0.68 -13.30 6.49 -115.06 -0.75 -14.05 16 11 C 0.05 0.68 5.80 -3.82 -0.02 0.66 16 12 C 0.12 1.60 5.93 -4.04 -0.02 1.58 16 13 N -0.72 -7.87 5.51 -61.27 -0.34 -8.21 16 14 C 0.56 6.81 7.77 -12.36 -0.10 6.71 16 15 O -0.53 -8.51 16.35 5.32 0.09 -8.42 16 16 C -0.13 -1.20 5.87 -104.97 -0.62 -1.81 16 17 C -0.07 -0.53 9.54 -39.19 -0.37 -0.91 16 18 C -0.12 -0.79 9.81 -39.61 -0.39 -1.18 16 19 C -0.01 -0.11 6.33 -39.38 -0.25 -0.36 16 20 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.95 16 21 C -0.12 -0.86 9.81 -39.61 -0.39 -1.25 16 22 C -0.05 -0.42 9.59 -39.19 -0.38 -0.79 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H -0.01 -0.34 7.20 -51.93 -0.37 -0.71 16 25 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 26 H 0.34 6.46 8.72 -39.29 -0.34 6.12 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.40 3.19 6.50 -40.82 -0.27 2.92 16 32 H 0.14 0.67 6.40 -52.49 -0.34 0.33 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.15 1.27 7.65 -52.48 -0.40 0.87 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -32.65 318.88 -8.82 -41.47 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.24 Total: 3.06 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.99 Total: -6.58 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.31 Total: -48.81 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.65 -8.82 -41.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552779293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.261 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds