Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46847 * 269.99651 * 3 2 1 5 5 H 1.48502 * 109.47300 * 29.99293 * 3 2 1 6 6 H 1.48496 * 109.47088 * 149.99796 * 3 2 1 7 7 C 1.37880 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99739 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46703 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47329 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00488 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99620 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99936 * 180.02562 * 13 12 11 16 16 C 1.50708 * 109.46940 * 179.97438 * 15 13 12 17 17 C 1.38168 * 120.42681 * 265.00139 * 16 15 13 18 18 N 1.31873 * 120.77409 * 180.30210 * 17 16 15 19 19 C 1.31908 * 121.76179 * 359.42367 * 18 17 16 20 20 C 1.38122 * 120.77726 * 0.57002 * 19 18 17 21 21 C 1.38775 * 120.42714 * 85.01680 * 16 15 13 22 22 Cl 1.73600 * 120.80380 * 359.96207 * 21 16 15 23 23 H 0.97004 * 119.99526 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47117 * 59.99557 * 9 7 2 25 25 H 1.09000 * 109.46789 * 299.99514 * 9 7 2 26 26 H 1.08998 * 109.47585 * 59.99891 * 10 9 7 27 27 H 1.09000 * 109.47068 * 299.99391 * 10 9 7 28 28 H 1.08997 * 109.47614 * 59.99591 * 11 10 9 29 29 H 1.09006 * 109.47310 * 299.99410 * 11 10 9 30 30 H 0.97006 * 119.99744 * 0.02562 * 12 11 10 31 31 H 1.08998 * 109.47555 * 59.99935 * 15 13 12 32 32 H 1.09000 * 109.47024 * 299.99480 * 15 13 12 33 33 H 1.08002 * 119.60902 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.61446 * 180.31877 * 19 18 17 35 35 H 1.07998 * 120.42906 * 179.74255 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6367 0.0022 12 7 6.0398 -4.0180 0.0040 13 6 7.3648 -4.2643 0.0037 14 8 8.1529 -3.3425 0.0016 15 6 7.8670 -5.6852 0.0049 16 6 9.3741 -5.6853 0.0037 17 6 10.0729 -5.7904 -1.1836 18 7 11.3915 -5.7972 -1.1921 19 6 12.0936 -5.6935 -0.0802 20 6 11.4651 -5.5849 1.1450 21 6 10.0778 -5.5800 1.1951 22 17 9.2435 -5.4451 2.7115 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8752 -0.6806 -0.8889 26 1 3.6584 -3.1512 -0.8874 27 1 3.6577 -3.1499 0.8925 28 1 5.9148 -2.1221 0.8917 29 1 5.9148 -2.1237 -0.8883 30 1 5.4094 -4.7553 0.0045 31 1 7.5033 -6.1999 -0.8844 32 1 7.5040 -6.1981 0.8956 33 1 9.5327 -5.8726 -2.1152 34 1 13.1725 -5.6977 -0.1279 35 1 12.0455 -5.5045 2.0522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569986288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -25.997914 kcal Electronic energy + Delta-G solvation = -18658.571983 eV Core-core repulsion = 15488.820394 eV Total energy + Delta-G solvation = -3169.751588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78602 -39.37062 -37.04131 -35.62123 -33.76490 -33.32563 -32.19380 -31.49065 -28.74383 -26.81216 -23.99127 -23.47380 -22.34778 -20.80187 -19.92411 -17.76280 -17.22492 -17.13861 -16.75128 -16.04265 -15.47400 -15.14281 -14.52062 -14.26249 -14.18023 -14.14801 -13.74114 -13.39619 -12.82721 -12.71509 -12.47504 -12.29793 -11.98087 -11.84151 -11.26571 -11.11320 -10.91377 -10.26958 -10.02577 -9.95719 -9.83647 -9.75636 -9.69277 -9.32456 -9.24458 -8.91856 -8.57529 -6.08428 -4.07254 0.63367 0.70735 1.63315 2.63428 3.13527 3.29764 3.37480 3.41686 3.49188 3.99540 4.22225 4.32503 4.42622 4.51470 4.76850 4.91264 4.96501 5.18650 5.25711 5.29767 5.39841 5.53292 5.60896 5.64004 5.98044 6.15903 6.30372 6.41203 6.65237 6.75861 7.20037 7.33501 7.53334 7.55839 7.74191 8.24780 8.48016 8.95299 9.53870 11.04800 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.002924 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.872254 B = 9573.948321 C = 9720.729327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.724 5.724 13 C 0.512 3.488 14 O -0.536 6.536 15 C -0.106 4.106 16 C -0.106 4.106 17 C 0.127 3.873 18 N -0.480 5.480 19 C 0.110 3.890 20 C -0.165 4.165 21 C 0.021 3.979 22 Cl -0.047 7.047 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.400 0.600 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.956 -15.943 1.820 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.375 5.375 13 C 0.297 3.703 14 O -0.412 6.412 15 C -0.147 4.147 16 C -0.110 4.110 17 C -0.031 4.031 18 N -0.188 5.188 19 C -0.047 4.047 20 C -0.185 4.185 21 C -0.014 4.014 22 Cl -0.018 7.018 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.234 0.766 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 22.730 -15.199 1.166 27.368 hybrid contribution -0.575 0.712 1.017 1.368 sum 22.155 -14.487 2.183 26.561 Atomic orbital electron populations 1.69914 1.06318 1.26978 1.50963 1.25029 0.94748 0.99242 0.94445 0.86778 0.80402 0.83530 0.78611 1.20220 1.21346 1.18913 1.21094 0.89296 0.94512 1.51150 0.90997 1.19502 0.97284 0.91472 0.96653 1.21705 0.90571 1.01069 1.01757 1.21662 0.96154 0.81039 1.01951 1.46131 1.06464 1.10135 1.74816 1.20262 0.82748 0.90520 0.76761 1.90731 1.55283 1.46074 1.49152 1.20680 0.91349 0.96389 1.06247 1.20250 0.96011 1.01797 0.92902 1.22689 0.89765 0.93832 0.96787 1.67689 1.08044 1.11972 1.31126 1.22793 1.00672 0.94400 0.86842 1.22088 0.92741 1.02780 1.00924 1.21199 0.92977 0.99488 0.87734 1.98407 1.78147 1.95800 1.29405 0.92676 0.96341 0.96750 0.92072 0.92071 0.91805 0.91756 0.76559 0.87008 0.87294 0.81892 0.81805 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 11 C 0.11 1.84 5.67 -4.04 -0.02 1.82 16 12 N -0.72 -9.17 5.56 -60.29 -0.33 -9.50 16 13 C 0.51 6.69 7.82 -10.99 -0.09 6.60 16 14 O -0.54 -9.29 16.03 5.56 0.09 -9.20 16 15 C -0.11 -0.94 5.41 -29.03 -0.16 -1.10 16 16 C -0.11 -1.09 4.39 -104.45 -0.46 -1.55 16 17 C 0.13 1.27 10.84 -17.56 -0.19 1.08 16 18 N -0.48 -5.11 10.36 -13.27 -0.14 -5.25 16 19 C 0.11 0.95 11.18 -17.56 -0.20 0.75 16 20 C -0.16 -1.44 9.94 -39.41 -0.39 -1.83 16 21 C 0.02 0.22 6.37 -39.17 -0.25 -0.03 16 22 Cl -0.05 -0.48 27.61 -51.86 -1.43 -1.91 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 25 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 31 H 0.11 0.65 8.06 -51.93 -0.42 0.23 16 32 H 0.11 0.82 7.24 -51.93 -0.38 0.45 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -34.34 319.38 -7.79 -42.13 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.45 Total: -1.29 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.44 Total: -9.93 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.30 Total: -41.62 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.43 Total: -1.91 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.34 -7.79 -42.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569986288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.128 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds