Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.50697 * 109.47426 * 239.99976 * 2 1 3 5 5 H 1.08002 * 119.99800 * 241.31926 * 4 2 1 6 6 C 1.37877 * 120.00203 * 61.32372 * 4 2 1 7 7 N 1.31514 * 120.00183 * 194.00769 * 6 4 2 8 8 Si 1.86805 * 120.00028 * 14.00433 * 6 4 2 9 9 H 1.48505 * 109.46765 * 84.54290 * 8 6 4 10 10 H 1.48490 * 109.47221 * 204.54597 * 8 6 4 11 11 H 1.48499 * 109.47018 * 324.55114 * 8 6 4 12 12 C 1.53003 * 109.47109 * 119.99528 * 2 1 3 13 13 S 1.81394 * 109.47153 * 300.00378 * 12 2 1 14 14 C 1.76204 * 102.99983 * 179.97438 * 13 12 2 15 15 N 1.32489 * 119.71078 * 359.72504 * 14 13 12 16 16 C 1.31924 * 121.61471 * 179.75428 * 15 14 13 17 17 C 1.38074 * 120.86036 * 0.52533 * 16 15 14 18 18 C 1.38863 * 119.33659 * 359.74301 * 17 16 15 19 19 C 1.38308 * 118.51479 * 0.02562 * 18 17 16 20 20 N 1.47999 * 120.45292 * 179.97438 * 19 18 17 21 21 O 1.21801 * 119.99898 * 0.02562 * 20 19 18 22 22 O 1.21801 * 119.99831 * 180.02562 * 20 19 18 23 23 H 1.09009 * 109.46531 * 69.41098 * 1 2 3 24 24 H 1.08994 * 109.46995 * 189.40586 * 1 2 3 25 25 H 1.08996 * 109.47121 * 309.41556 * 1 2 3 26 26 H 1.09000 * 109.47519 * 59.99809 * 3 2 1 27 27 H 1.08998 * 109.46845 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47244 * 299.99680 * 3 2 1 29 29 H 0.96997 * 119.99729 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46907 * 60.00241 * 12 2 1 31 31 H 1.08998 * 109.47296 * 180.02562 * 12 2 1 32 32 H 1.07998 * 119.57170 * 180.28930 * 16 15 14 33 33 H 1.08006 * 120.32682 * 179.72209 * 17 16 15 34 34 H 1.08006 * 120.74117 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6357 -1.6007 -1.1314 6 6 1.7221 -0.2237 -2.4825 7 7 1.9151 -0.9732 -3.5458 8 14 1.0274 1.5004 -2.6687 9 1 2.1417 2.4813 -2.7091 10 1 0.2465 1.5860 -3.9288 11 1 0.1420 1.8044 -1.5159 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7303 14 6 2.1119 -0.8241 4.0453 15 7 2.8553 -1.8855 3.7693 16 6 3.3842 -2.6265 4.7241 17 6 3.1709 -2.3253 6.0546 18 6 2.3931 -1.2239 6.3867 19 6 1.8556 -0.4629 5.3645 20 7 1.0197 0.7197 5.6696 21 8 0.8014 1.0289 6.8273 22 8 0.5501 1.3838 4.7629 23 1 -0.3633 0.3614 -0.9621 24 1 -0.3633 -1.0138 0.1679 25 1 -0.3633 0.6525 0.7939 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6964 -0.6308 -4.4266 30 1 1.6767 -1.7489 1.2494 31 1 3.1300 -0.7208 1.2496 32 1 3.9888 -3.4820 4.4616 33 1 3.6045 -2.9405 6.8293 34 1 2.2113 -0.9678 7.4200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570464206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = 48.377299 kcal Electronic energy + Delta-G solvation = -19766.890767 eV Core-core repulsion = 16602.408036 eV Total energy + Delta-G solvation = -3164.482731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17470 -40.28238 -36.61114 -36.40963 -33.33962 -32.18126 -31.88933 -27.28859 -26.72476 -26.35958 -24.97057 -24.41331 -23.08505 -19.73022 -19.26017 -18.70594 -17.95172 -17.54634 -16.68667 -16.20550 -15.59305 -15.52681 -14.69573 -14.29404 -13.70195 -13.60572 -13.14578 -13.09395 -12.78371 -12.06294 -11.97412 -11.82533 -11.48223 -11.39704 -11.09020 -10.74519 -10.70581 -10.41450 -10.32977 -10.14955 -10.07430 -10.03295 -9.74869 -8.98015 -8.72216 -8.47797 -7.62743 -6.17948 -4.15699 -0.34159 0.51727 1.24684 1.30993 1.41230 2.58783 3.06104 3.25669 3.34565 3.39615 3.99682 4.09540 4.32183 4.34801 4.42006 4.76266 5.13215 5.16901 5.39360 5.65719 5.75802 5.79216 6.09999 6.34811 6.36244 6.41834 6.51420 6.58677 6.70024 6.87776 7.15195 7.17797 7.36755 7.66311 7.68748 8.40282 8.85121 9.45880 10.94779 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.005064 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.727113 B = 5528.245559 C = 6322.210819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 C -0.154 4.154 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.880 3.120 9 H -0.284 1.284 10 H -0.304 1.304 11 H -0.246 1.246 12 C -0.100 4.100 13 S 0.055 5.945 14 C 0.161 3.839 15 N -0.478 5.478 16 C 0.172 3.828 17 C -0.200 4.200 18 C 0.010 3.990 19 C -0.106 4.106 20 N 0.039 4.961 21 O -0.184 6.184 22 O -0.134 6.134 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -1.915 18.802 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 C -0.212 4.212 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.212 1.212 10 H -0.232 1.232 11 H -0.172 1.172 12 C -0.248 4.248 13 S 0.307 5.693 14 C -0.088 4.088 15 N -0.192 5.192 16 C 0.007 3.993 17 C -0.226 4.226 18 C -0.017 4.017 19 C -0.203 4.203 20 N 0.551 4.449 21 O -0.391 6.391 22 O -0.350 6.350 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.173 0.827 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.754 -1.619 17.481 17.643 hybrid contribution 0.304 0.126 0.687 0.761 sum 2.058 -1.493 18.168 18.345 Atomic orbital electron populations 1.22389 0.97420 1.00220 1.00578 1.18358 0.92679 0.91960 0.91854 1.22466 1.01238 0.98118 0.99328 1.20704 1.34267 1.12298 0.87765 0.90621 1.24941 0.94562 0.97321 0.95696 1.69939 1.48092 1.35937 0.98756 0.87356 0.79626 0.85500 0.76297 1.21153 1.23211 1.17166 1.24245 1.04296 1.02749 0.93549 1.87096 1.56441 1.30971 0.94771 1.23940 0.93793 0.95158 0.95910 1.68726 1.10342 1.04388 1.35736 1.23362 0.91313 0.95773 0.88804 1.22085 1.02907 0.99100 0.98518 1.21389 0.89780 0.90904 0.99655 1.21557 1.08258 0.95060 0.95451 1.43293 0.99720 1.01222 1.00617 1.94498 1.64787 1.74382 1.05433 1.94540 1.51291 1.50045 1.39101 0.92226 0.93301 0.94832 0.94071 0.92685 0.93702 0.92484 0.89242 0.89361 0.80644 0.82656 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.41 37.16 0.28 -2.89 16 2 C 0.05 1.20 0.52 -155.66 -0.08 1.12 16 3 C -0.15 -3.28 7.46 37.16 0.28 -3.00 16 4 C -0.51 -13.60 8.62 -34.44 -0.30 -13.89 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.16 5.32 -17.82 -0.09 2.06 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 8 Si 0.88 21.26 22.79 -169.99 -3.87 17.39 16 9 H -0.28 -6.82 7.10 56.52 0.40 -6.42 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.25 -5.51 4.65 56.52 0.26 -5.25 16 12 C -0.10 -1.94 4.13 37.16 0.15 -1.78 16 13 S 0.06 0.96 16.00 -107.50 -1.72 -0.76 16 14 C 0.16 2.45 7.00 -16.93 -0.12 2.33 16 15 N -0.48 -6.65 9.43 -12.11 -0.11 -6.76 16 16 C 0.17 1.61 11.17 -17.57 -0.20 1.41 16 17 C -0.20 -1.50 10.11 -39.41 -0.40 -1.90 16 18 C 0.01 0.10 9.66 -39.32 -0.38 -0.28 16 19 C -0.11 -1.47 6.89 -79.59 -0.55 -2.02 16 20 N 0.04 0.61 4.45 34.14 0.15 0.77 16 21 O -0.18 -2.79 18.52 -29.46 -0.55 -3.33 16 22 O -0.13 -2.29 15.84 -29.46 -0.47 -2.76 16 23 H 0.06 1.34 4.30 -51.92 -0.22 1.11 16 24 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 25 H 0.03 0.65 7.29 -51.93 -0.38 0.27 16 26 H 0.04 0.78 6.91 -51.93 -0.36 0.43 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 1.00 2.25 -51.93 -0.12 0.88 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.16 1.19 7.69 -52.48 -0.40 0.78 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -30.81 291.55 -6.52 -37.33 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.71 Total: -1.78 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.41 Total: -18.84 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.81 Total: -31.63 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -1.01 Total: -6.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -3.87 Total: 17.39 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.72 Total: -0.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.81 -6.52 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570464206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.705 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds