Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31261 * 1 3 3 Si 1.86800 * 119.99820 * 2 1 4 4 H 1.48509 * 109.47192 * 275.36087 * 3 2 1 5 5 H 1.48496 * 109.47403 * 35.36035 * 3 2 1 6 6 H 1.48500 * 109.47412 * 155.36377 * 3 2 1 7 7 C 1.39062 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99767 * 341.29604 * 7 2 1 9 9 N 1.37181 * 120.00105 * 161.29571 * 7 2 1 10 10 C 1.36097 * 119.82497 * 329.25972 * 9 7 2 11 11 N 1.30367 * 122.10747 * 179.69725 * 10 9 7 12 12 C 1.34009 * 121.24976 * 0.28163 * 11 10 9 13 13 C 1.39875 * 119.64556 * 359.97438 * 12 11 10 14 14 N 1.35328 * 107.32761 * 180.02562 * 13 12 11 15 15 C 1.30202 * 109.39450 * 359.97438 * 14 13 12 16 16 N 1.36481 * 109.77284 * 0.02562 * 15 14 13 17 17 C 1.40139 * 126.28880 * 180.02562 * 16 15 14 18 18 C 1.38850 * 120.06645 * 129.69954 * 17 16 15 19 19 C 1.38117 * 119.93289 * 179.76960 * 18 17 16 20 20 C 1.38279 * 120.06760 * 0.50411 * 19 18 17 21 21 C 1.38282 * 120.13501 * 359.74964 * 20 19 18 22 22 C 1.38121 * 120.06593 * 0.02562 * 21 20 19 23 23 C 1.35175 * 119.82114 * 149.55499 * 9 7 2 24 24 O 1.21879 * 120.90388 * 359.96981 * 23 9 7 25 25 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 26 26 H 1.08001 * 118.94892 * 359.97438 * 10 9 7 27 27 H 1.07992 * 125.11481 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.02641 * 0.02562 * 18 17 16 29 29 H 1.08001 * 119.96417 * 180.23072 * 19 18 17 30 30 H 1.07997 * 119.93633 * 179.72162 * 20 19 18 31 31 H 1.07996 * 119.96755 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.03098 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.3808 2.1119 -1.3940 5 1 1.5053 2.6174 0.8102 6 1 3.5962 1.4103 0.5836 7 6 2.0080 -1.2043 -0.0005 8 1 1.5108 -2.1150 0.2990 9 7 3.3255 -1.2354 -0.3815 10 6 3.7847 -0.3458 -1.3035 11 7 5.0286 -0.3319 -1.6933 12 6 5.9203 -1.2044 -1.2040 13 6 5.5148 -2.1501 -0.2564 14 7 6.6003 -2.8929 0.0617 15 6 7.6273 -2.4712 -0.6185 16 7 7.2561 -1.4273 -1.4155 17 6 8.0877 -0.7150 -2.2902 18 6 7.6999 -0.5118 -3.6079 19 6 8.5194 0.1947 -4.4663 20 6 9.7297 0.6905 -4.0175 21 6 10.1211 0.4852 -2.7072 22 6 9.3038 -0.2165 -1.8427 23 6 4.1593 -2.1534 0.1564 24 8 3.7576 -2.9579 0.9791 25 1 -0.4850 0.8401 0.0004 26 1 3.0976 0.3745 -1.7224 27 1 8.6233 -2.8845 -0.5601 28 1 6.7565 -0.9023 -3.9600 29 1 8.2166 0.3562 -5.4903 30 1 10.3709 1.2388 -4.6918 31 1 11.0667 0.8740 -2.3594 32 1 9.6098 -0.3761 -0.8194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581704822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = 100.071048 kcal Electronic energy + Delta-G solvation = -21093.474707 eV Core-core repulsion = 17828.082385 eV Total energy + Delta-G solvation = -3265.392322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.16202 -40.01368 -38.83081 -36.48157 -34.36728 -33.81750 -32.31893 -31.15233 -29.38110 -28.83583 -26.10945 -24.08331 -23.25901 -23.07425 -22.11277 -20.28930 -18.98251 -18.52600 -17.29333 -16.78527 -16.32440 -15.93042 -15.68288 -15.05447 -14.52613 -14.21412 -13.96766 -13.78680 -13.63919 -13.55068 -13.34557 -12.88488 -12.75701 -12.19375 -11.88766 -11.38488 -11.24964 -11.21838 -10.62152 -10.33482 -10.09742 -9.99722 -9.31177 -9.14936 -9.11447 -8.78096 -8.48658 -7.35305 -7.11661 -4.69947 0.88283 1.19591 1.53586 2.43821 2.64142 2.75869 2.91241 2.96709 3.18875 3.57413 3.60273 3.65839 4.17760 4.51531 4.70663 4.74294 4.75546 4.89065 4.93798 5.20547 5.21515 5.29417 5.44454 5.64887 5.74692 5.88786 6.13804 6.17450 6.30961 6.42875 6.60786 6.71762 6.98214 7.21834 7.51144 7.78412 8.13028 8.21563 8.30685 8.71505 9.04766 9.94066 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.005746 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.780833 B = 4871.447833 C = 5744.618905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.328 4.328 8 H 0.137 0.863 9 N -0.349 5.349 10 C 0.304 3.696 11 N -0.549 5.549 12 C 0.272 3.728 13 C -0.130 4.130 14 N -0.423 5.423 15 C 0.197 3.803 16 N -0.427 5.427 17 C 0.139 3.861 18 C -0.101 4.101 19 C -0.104 4.104 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.121 4.121 23 C 0.538 3.462 24 O -0.527 6.527 25 H 0.292 0.708 26 H 0.194 0.806 27 H 0.214 0.786 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.748 5.267 -8.939 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.143 4.143 3 Si 0.692 3.308 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.457 4.457 8 H 0.154 0.846 9 N -0.050 5.050 10 C 0.024 3.976 11 N -0.281 5.281 12 C 0.041 3.959 13 C -0.258 4.258 14 N -0.139 5.139 15 C -0.085 4.085 16 N -0.118 5.118 17 C 0.047 3.953 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.125 4.125 22 C -0.141 4.141 23 C 0.336 3.664 24 O -0.404 6.404 25 H 0.104 0.896 26 H 0.210 0.790 27 H 0.230 0.770 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.540 4.633 -8.299 18.216 hybrid contribution 0.074 1.076 0.055 1.080 sum 15.614 5.709 -8.244 18.557 Atomic orbital electron populations 1.69594 1.06360 1.30108 1.37486 1.25480 0.95673 0.98983 0.94162 0.86923 0.81363 0.82352 0.80129 1.18044 1.19336 1.17648 1.19790 0.81550 0.98972 1.45380 0.84601 1.42871 1.11185 1.23813 1.27150 1.24400 0.91102 0.93936 0.88169 1.67032 1.00221 1.28075 1.32761 1.18898 0.84972 0.95472 0.96521 1.20223 0.95484 1.02873 1.07186 1.69937 0.97293 1.24906 1.21795 1.25143 1.00203 0.89715 0.93477 1.42194 1.05845 1.28537 1.35187 1.17697 0.91371 0.96899 0.89287 1.21181 1.00485 0.98986 0.91426 1.21048 0.94116 0.97313 0.99780 1.21218 0.96716 1.00171 0.96040 1.20986 0.99547 0.98484 0.93529 1.21083 0.93961 0.98626 1.00414 1.15936 0.83601 0.83811 0.83077 1.90784 1.77657 1.38824 1.33175 0.89634 0.79025 0.76970 0.85065 0.85276 0.85669 0.85339 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.05 13.95 55.50 0.77 -19.27 16 2 C 0.07 1.76 5.31 -17.49 -0.09 1.67 16 3 Si 0.87 18.08 24.67 -169.99 -4.19 13.89 16 4 H -0.25 -4.80 6.75 56.52 0.38 -4.41 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.25 -5.63 6.91 56.52 0.39 -5.24 16 7 C -0.33 -8.60 9.54 -14.85 -0.14 -8.74 16 8 H 0.14 3.91 7.79 -52.49 -0.41 3.50 16 9 N -0.35 -8.78 2.53 -65.43 -0.17 -8.94 16 10 C 0.30 6.77 8.66 -89.51 -0.78 5.99 16 11 N -0.55 -11.87 10.42 -13.19 -0.14 -12.01 16 12 C 0.27 5.89 7.73 -155.20 -1.20 4.69 16 13 C -0.13 -3.16 7.23 -84.39 -0.61 -3.77 16 14 N -0.42 -9.29 11.28 -11.69 -0.13 -9.43 16 15 C 0.20 3.33 12.23 -89.29 -1.09 2.24 16 16 N -0.43 -7.56 2.89 -61.39 -0.18 -7.74 16 17 C 0.14 2.01 6.01 -83.61 -0.50 1.51 16 18 C -0.10 -1.35 9.69 -39.40 -0.38 -1.74 16 19 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 20 C -0.12 -1.10 10.04 -39.55 -0.40 -1.50 16 21 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 22 C -0.12 -1.40 9.69 -39.40 -0.38 -1.78 16 23 C 0.54 14.43 7.44 -14.76 -0.11 14.32 16 24 O -0.53 -15.63 16.99 5.03 0.09 -15.54 16 25 H 0.29 6.52 8.31 -40.82 -0.34 6.18 16 26 H 0.19 3.89 4.62 -52.49 -0.24 3.65 16 27 H 0.21 2.41 8.06 -52.49 -0.42 1.99 16 28 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -31.84 286.19 -8.47 -40.30 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.35 Total: 4.41 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: -6.48 Total: 10.02 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.16 Total: -57.39 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -4.19 Total: 13.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.84 -8.47 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581704822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.375 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds