Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99485 * 2 1 4 4 H 1.48501 * 109.46732 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47204 * 299.99863 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00068 * 3 2 1 7 7 C 1.37875 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00050 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.78232 * 61.79376 * 9 7 2 11 11 C 1.54591 * 110.72431 * 298.54824 * 9 7 2 12 12 C 1.53995 * 105.22844 * 219.73097 * 11 9 7 13 13 N 1.47911 * 107.05293 * 358.72684 * 12 11 9 14 14 C 1.46904 * 110.99533 * 145.84183 * 13 12 11 15 15 C 1.50698 * 109.46579 * 184.28924 * 14 13 12 16 16 C 1.38658 * 120.79423 * 105.44945 * 15 14 13 17 17 C 1.38184 * 119.17650 * 179.97438 * 16 15 14 18 18 N 1.31884 * 120.79719 * 359.97438 * 17 16 15 19 19 C 1.31842 * 121.73564 * 0.02562 * 18 17 16 20 20 C 1.38348 * 120.74962 * 359.74042 * 19 18 17 21 21 Cl 1.73590 * 120.43891 * 180.28614 * 20 19 18 22 22 C 1.48529 * 105.81879 * 25.32918 * 13 12 11 23 23 H 0.97001 * 120.00335 * 0.02562 * 1 2 3 24 24 H 0.96701 * 114.00217 * 298.20563 * 10 9 7 25 25 H 1.09001 * 110.31405 * 100.76751 * 11 9 7 26 26 H 1.09003 * 110.31227 * 338.69782 * 11 9 7 27 27 H 1.08998 * 109.91351 * 118.07552 * 12 11 9 28 28 H 1.08998 * 109.92197 * 239.17616 * 12 11 9 29 29 H 1.08993 * 109.47418 * 304.28837 * 14 13 12 30 30 H 1.09000 * 109.46977 * 64.29685 * 14 13 12 31 31 H 1.07997 * 120.40721 * 359.95297 * 16 15 14 32 32 H 1.08003 * 119.60111 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.62280 * 179.97438 * 19 18 17 34 34 H 1.09003 * 110.66983 * 79.23040 * 22 13 12 35 35 H 1.09003 * 110.66387 * 202.35782 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4504 -2.6223 -1.1776 11 6 0.3798 -2.6277 1.2699 12 6 0.5074 -4.1007 1.7005 13 7 1.3763 -4.7692 0.7076 14 6 2.1983 -5.8081 1.3423 15 6 3.1429 -6.3930 0.3241 16 6 4.4919 -6.0728 0.3410 17 6 5.3281 -6.6288 -0.6083 18 7 4.8573 -7.4550 -1.5221 19 6 3.5811 -7.7825 -1.5693 20 6 2.6846 -7.2693 -0.6490 21 17 1.0073 -7.7118 -0.7142 22 6 2.2264 -3.6983 0.1274 23 1 -0.4851 0.8400 -0.0004 24 1 -0.2296 -1.9402 -1.2639 25 1 -0.6591 -2.3889 1.0419 26 1 0.7550 -1.9704 2.0543 27 1 0.9603 -4.1603 2.6901 28 1 -0.4762 -4.5704 1.7135 29 1 2.7710 -5.3695 2.1594 30 1 1.5523 -6.5946 1.7325 31 1 4.8840 -5.3969 1.0865 32 1 6.3800 -6.3837 -0.6018 33 1 3.2323 -8.4621 -2.3328 34 1 3.0490 -3.4536 0.7994 35 1 2.6031 -3.9943 -0.8517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = -14.331499 kcal Electronic energy + Delta-G solvation = -20247.723682 eV Core-core repulsion = 17078.477987 eV Total energy + Delta-G solvation = -3169.245694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30795 -38.30222 -36.40878 -35.11030 -32.91223 -32.12575 -31.01096 -29.51900 -28.04292 -26.05489 -24.31305 -23.51045 -21.86237 -20.20320 -19.51565 -17.11780 -16.77343 -16.58366 -15.92917 -15.45957 -14.93674 -14.45190 -14.11357 -13.96908 -13.92807 -13.37986 -13.01273 -12.39027 -12.30292 -11.93694 -11.82383 -11.47589 -11.32099 -11.18487 -10.99315 -10.92074 -10.71843 -10.46465 -10.42280 -9.82507 -9.55479 -9.51500 -9.16581 -8.86009 -8.60938 -8.10321 -7.77937 -6.22340 -4.30645 0.97128 1.12741 2.23604 3.19310 3.28394 3.31943 3.65875 4.27583 4.40242 4.50187 4.60449 4.82491 4.96409 5.06032 5.26759 5.43748 5.58310 5.64276 5.67382 5.84908 5.92752 5.97016 6.13836 6.18081 6.41309 6.49730 6.57462 6.85980 7.01324 7.34413 7.49041 7.50750 7.60787 7.80226 7.82415 8.17120 8.72039 9.38558 9.55738 10.84682 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.005275 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.606208 B = 5307.033946 C = 5884.606487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.257 3.743 10 O -0.578 6.578 11 C -0.128 4.128 12 C 0.037 3.963 13 N -0.499 5.499 14 C 0.079 3.921 15 C -0.020 4.020 16 C -0.155 4.155 17 C 0.097 3.903 18 N -0.476 5.476 19 C 0.106 3.894 20 C -0.066 4.066 21 Cl -0.041 7.041 22 C 0.056 3.944 23 H 0.266 0.734 24 H 0.376 0.624 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.043 0.957 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -12.478 2.865 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.217 3.783 10 O -0.386 6.386 11 C -0.167 4.167 12 C -0.090 4.090 13 N -0.223 5.223 14 C -0.049 4.049 15 C -0.029 4.029 16 C -0.175 4.175 17 C -0.060 4.060 18 N -0.185 5.185 19 C -0.052 4.052 20 C -0.096 4.096 21 Cl -0.012 7.012 22 C -0.072 4.072 23 H 0.076 0.924 24 H 0.226 0.774 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.158 0.842 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.061 0.939 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.245 -13.539 1.767 14.626 hybrid contribution -0.148 2.229 1.461 2.669 sum 5.096 -11.310 3.228 12.818 Atomic orbital electron populations 1.69745 1.05903 1.27294 1.50336 1.24992 0.94965 0.99365 0.93776 0.86453 0.80138 0.83185 0.77703 1.19725 1.20766 1.20913 1.21618 0.93514 0.90778 1.51631 0.92197 1.19341 0.86635 0.90278 0.82044 1.86159 1.51337 1.56145 1.44980 1.22932 1.02064 0.91264 1.00473 1.22921 0.96767 0.96842 0.92485 1.64908 1.17908 1.10907 1.28613 1.21271 0.94081 0.96704 0.92832 1.20219 0.94385 0.93221 0.95105 1.22127 0.92932 1.01249 1.01199 1.22775 1.00507 0.92482 0.90196 1.67771 1.14367 1.13549 1.22802 1.22740 0.88019 0.97874 0.96556 1.21943 0.87725 1.00850 0.99077 1.98383 1.13933 1.91203 1.97696 1.23199 0.94766 0.90982 0.98213 0.92415 0.77444 0.91410 0.92061 0.95209 0.91581 0.93664 0.89553 0.84157 0.82253 0.82110 0.93850 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 11.02 55.43 0.61 -23.10 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.23 8.14 -34.44 -0.28 -14.51 16 8 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 9 C 0.26 6.33 0.95 -89.83 -0.09 6.24 16 10 O -0.58 -15.29 13.09 -35.23 -0.46 -15.75 16 11 C -0.13 -2.91 5.26 -25.38 -0.13 -3.04 16 12 C 0.04 0.70 6.70 -2.75 -0.02 0.68 16 13 N -0.50 -9.35 5.33 -231.78 -1.23 -10.58 16 14 C 0.08 1.19 4.39 -4.97 -0.02 1.17 16 15 C -0.02 -0.29 4.43 -104.28 -0.46 -0.76 16 16 C -0.15 -1.97 9.62 -39.45 -0.38 -2.35 16 17 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 18 N -0.48 -6.57 10.36 -13.22 -0.14 -6.70 16 19 C 0.11 1.42 10.99 -17.51 -0.19 1.23 16 20 C -0.07 -0.96 6.34 -39.35 -0.25 -1.21 16 21 Cl -0.04 -0.59 27.81 -51.86 -1.44 -2.03 16 22 C 0.06 1.18 4.76 -1.81 -0.01 1.18 16 23 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.38 10.02 7.48 45.56 0.34 10.36 16 25 H 0.07 1.62 7.99 -51.93 -0.41 1.21 16 26 H 0.06 1.44 7.84 -51.93 -0.41 1.03 16 27 H 0.03 0.50 7.67 -51.93 -0.40 0.11 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.64 7.84 -51.93 -0.41 0.23 16 30 H 0.09 1.21 7.69 -51.93 -0.40 0.81 16 31 H 0.14 1.53 8.05 -52.49 -0.42 1.11 16 32 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.04 0.89 7.92 -51.93 -0.41 0.48 16 35 H 0.07 1.55 7.96 -51.93 -0.41 1.13 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -28.36 307.27 -8.92 -37.28 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.74 Total: 9.39 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.12 Total: -8.59 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.76 Total: -40.38 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.46 Total: -15.75 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.44 Total: -2.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.36 -8.92 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.952 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds