Wall clock time and date at job start Tue Mar 31 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38138 * 119.96872 * 2 1 4 4 C 1.38838 * 119.94044 * 180.02562 * 3 2 1 5 5 N 1.40002 * 120.05751 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99616 * 144.92865 * 5 4 3 7 7 O 1.21583 * 120.00760 * 4.61657 * 6 5 4 8 8 N 1.34781 * 119.99626 * 184.61420 * 6 5 4 9 9 C 1.46503 * 119.99934 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47126 * 35.00209 * 9 8 6 11 11 C 1.52996 * 109.47141 * 274.99609 * 9 8 6 12 12 C 1.50704 * 109.46795 * 154.99577 * 9 8 6 13 13 H 1.08000 * 120.00250 * 25.06109 * 12 9 8 14 14 C 1.37882 * 119.99787 * 205.05321 * 12 9 8 15 15 N 1.31508 * 119.99817 * 185.01227 * 14 12 9 16 16 Si 1.86799 * 119.99889 * 5.01642 * 14 12 9 17 17 H 1.48490 * 109.47395 * 94.95220 * 16 14 12 18 18 H 1.48501 * 109.46970 * 214.95246 * 16 14 12 19 19 H 1.48500 * 109.46898 * 334.94785 * 16 14 12 20 20 C 1.38880 * 119.88868 * 0.02562 * 4 3 2 21 21 C 1.38098 * 119.94211 * 0.02562 * 20 4 3 22 22 C 1.38357 * 119.97299 * 180.02562 * 2 1 3 23 23 Cl 1.73597 * 119.94316 * 0.25193 * 22 2 1 24 24 H 1.09008 * 109.46970 * 269.97157 * 1 2 3 25 25 H 1.08994 * 109.47649 * 29.97185 * 1 2 3 26 26 H 1.09002 * 109.47302 * 149.97356 * 1 2 3 27 27 H 1.07991 * 120.03159 * 0.02562 * 3 2 1 28 28 H 0.96998 * 119.99476 * 324.93355 * 5 4 3 29 29 H 0.96995 * 120.00100 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.47045 * 185.00050 * 11 9 8 31 31 H 1.08999 * 109.47121 * 305.00296 * 11 9 8 32 32 H 1.08998 * 109.47168 * 65.00470 * 11 9 8 33 33 H 0.97003 * 120.00311 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.03093 * 179.97438 * 20 4 3 35 35 H 1.07996 * 119.97042 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1967 0.0000 4 6 3.5854 1.1960 -0.0005 5 7 4.2872 2.4074 -0.0011 6 6 5.4518 2.5117 0.6691 7 8 5.9354 1.5327 1.2038 8 7 6.0805 3.7014 0.7465 9 6 7.3467 3.8147 1.4746 10 1 7.9230 2.8984 1.3461 11 6 7.0621 4.0339 2.9618 12 6 8.1330 4.9822 0.9361 13 1 7.6209 5.8017 0.4540 14 6 9.5061 5.0040 1.0591 15 7 10.1835 6.0652 0.6789 16 14 10.4042 3.5263 1.7657 17 1 10.8709 2.6545 0.6579 18 1 11.5723 3.9890 2.5573 19 1 9.4832 2.7608 2.6437 20 6 4.2768 -0.0084 -0.0016 21 6 3.5822 -1.2020 -0.0027 22 6 2.1982 -1.1985 -0.0005 23 17 1.3280 -2.7006 -0.0078 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6570 2.1319 0.0004 28 1 3.9351 3.1716 -0.4838 29 1 5.6950 4.4823 0.3196 30 1 8.0000 4.2067 3.4896 31 1 6.4118 4.9002 3.0834 32 1 6.5718 3.1511 3.3719 33 1 11.1496 6.0805 0.7651 34 1 5.3568 -0.0116 -0.0025 35 1 4.1195 -2.1388 -0.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594201271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:13 Heat of formation + Delta-G solvation = -17.454746 kcal Electronic energy + Delta-G solvation = -19256.018441 eV Core-core repulsion = 16086.637312 eV Total energy + Delta-G solvation = -3169.381129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44182 -38.84155 -36.59328 -35.31558 -34.36111 -32.77067 -32.32100 -30.32760 -28.75299 -26.96276 -25.30555 -22.92275 -22.48582 -20.68740 -19.93206 -18.52393 -17.28710 -16.64361 -16.45056 -15.69778 -15.11714 -14.73743 -14.23848 -14.19639 -14.06358 -13.38223 -13.15710 -12.73575 -12.60074 -12.51646 -12.39158 -12.18266 -11.91771 -11.54642 -11.46098 -11.19464 -10.88450 -10.80683 -10.55928 -10.00312 -9.89182 -9.56757 -9.25398 -8.87841 -8.74931 -8.32827 -7.88586 -6.26838 -4.30203 1.10569 1.24233 2.10334 2.96752 3.23709 3.32508 3.39761 3.40130 3.79097 4.29514 4.64056 4.65275 4.69596 5.07219 5.12920 5.29371 5.35956 5.42432 5.53517 5.66830 5.87290 6.06780 6.24568 6.28375 6.32889 6.46630 6.49952 6.64213 6.82058 6.97945 7.04484 7.29100 7.38549 7.49377 8.19143 8.55803 8.73106 9.00564 9.34693 10.84915 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037128 B = 0.003458 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.973597 B = 8095.920377 C = 8525.846579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.146 4.146 4 C 0.190 3.810 5 N -0.694 5.694 6 C 0.693 3.307 7 O -0.584 6.584 8 N -0.712 5.712 9 C 0.250 3.750 10 H 0.051 0.949 11 C -0.150 4.150 12 C -0.534 4.534 13 H 0.079 0.921 14 C 0.081 3.919 15 N -0.889 5.889 16 Si 0.870 3.130 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.254 1.254 20 C -0.116 4.116 21 C -0.087 4.087 22 C -0.062 4.062 23 Cl -0.080 7.080 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.406 0.594 29 H 0.392 0.608 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.152 0.848 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.080 -10.888 -2.677 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.060 4.060 3 C -0.167 4.167 4 C 0.093 3.907 5 N -0.342 5.342 6 C 0.394 3.606 7 O -0.462 6.462 8 N -0.363 5.363 9 C 0.147 3.853 10 H 0.069 0.931 11 C -0.209 4.209 12 C -0.572 4.572 13 H 0.097 0.903 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.696 3.304 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.178 1.178 20 C -0.137 4.137 21 C -0.106 4.106 22 C -0.090 4.090 23 Cl -0.051 7.051 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.241 0.759 29 H 0.225 0.775 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.170 0.830 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.400 -11.710 -2.151 21.084 hybrid contribution 0.242 0.058 -0.074 0.260 sum -17.158 -11.653 -2.225 20.860 Atomic orbital electron populations 1.20840 0.90323 1.03274 1.02846 1.19425 0.96363 0.90796 0.99433 1.20671 0.92020 0.97802 1.06235 1.17605 0.90235 0.85735 0.97111 1.42837 1.23757 1.12829 1.54765 1.16184 0.79891 0.85153 0.79396 1.90866 1.66459 1.36732 1.52171 1.45782 1.25730 1.07907 1.56852 1.19072 0.80036 0.98244 0.87985 0.93135 1.22304 1.00744 0.99167 0.98733 1.20991 0.91793 1.04352 1.40040 0.90345 1.24866 0.97209 0.95946 0.94290 1.69879 1.07845 1.28179 1.46634 0.86951 0.79846 0.83365 0.80199 1.20048 1.20968 1.17827 1.21399 1.02054 0.89934 1.00271 1.20943 0.91578 0.98939 0.99141 1.20697 0.92248 0.86252 1.09774 1.98331 1.76916 1.32707 1.97157 0.90753 0.91193 0.90871 0.84990 0.75878 0.77474 0.92639 0.93600 0.95140 0.92219 0.83013 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.61 36.00 0.35 -0.61 16 2 C -0.06 -0.65 5.88 -104.62 -0.62 -1.26 16 3 C -0.15 -1.65 9.62 -39.40 -0.38 -2.03 16 4 C 0.19 2.63 6.30 -83.67 -0.53 2.10 16 5 N -0.69 -9.71 5.35 -14.21 -0.08 -9.79 16 6 C 0.69 12.88 8.37 -86.92 -0.73 12.15 16 7 O -0.58 -12.87 13.44 5.29 0.07 -12.80 16 8 N -0.71 -13.63 5.07 -59.81 -0.30 -13.93 16 9 C 0.25 5.77 2.09 -69.08 -0.14 5.63 16 10 H 0.05 1.28 5.16 -51.93 -0.27 1.01 16 11 C -0.15 -3.26 9.05 37.16 0.34 -2.93 16 12 C -0.53 -13.98 9.06 -34.44 -0.31 -14.29 16 13 H 0.08 2.16 8.02 -52.49 -0.42 1.74 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 16 Si 0.87 20.98 26.34 -169.99 -4.48 16.50 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.25 -6.01 5.96 56.52 0.34 -5.68 16 20 C -0.12 -1.72 8.70 -39.40 -0.34 -2.06 16 21 C -0.09 -1.11 9.82 -39.57 -0.39 -1.50 16 22 C -0.06 -0.74 6.31 -39.48 -0.25 -0.99 16 23 Cl -0.08 -0.84 27.28 -51.86 -1.41 -2.26 16 24 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.07 0.58 6.89 -51.93 -0.36 0.23 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.41 4.25 8.84 -40.82 -0.36 3.89 16 29 H 0.39 6.45 8.58 -40.82 -0.35 6.10 16 30 H 0.05 1.22 6.89 -51.93 -0.36 0.86 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.15 2.57 6.22 -52.49 -0.33 2.24 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -30.74 309.44 -8.04 -38.79 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.18 Total: 7.49 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.10 Total: -3.66 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.39 Total: -48.72 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.48 Total: 16.50 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.41 Total: -2.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.74 -8.04 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594201271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.330 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds