Wall clock time and date at job start Tue Mar 31 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38135 * 119.97064 * 2 1 4 4 C 1.38836 * 119.94302 * 180.29330 * 3 2 1 5 5 N 1.40007 * 120.05805 * 179.67387 * 4 3 2 6 6 C 1.34768 * 120.00141 * 214.81417 * 5 4 3 7 7 O 1.21588 * 120.00139 * 355.38489 * 6 5 4 8 8 N 1.34783 * 120.00025 * 175.37681 * 6 5 4 9 9 C 1.46491 * 120.00078 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47571 * 325.00825 * 9 8 6 11 11 C 1.53002 * 109.47148 * 85.00328 * 9 8 6 12 12 C 1.50704 * 109.47295 * 205.00070 * 9 8 6 13 13 H 1.08000 * 119.99479 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00132 * 180.27331 * 12 9 8 15 15 N 1.31521 * 119.99837 * 359.73078 * 14 12 9 16 16 Si 1.86796 * 120.00042 * 179.72688 * 14 12 9 17 17 H 1.48501 * 109.47165 * 90.00375 * 16 14 12 18 18 H 1.48499 * 109.47153 * 210.00667 * 16 14 12 19 19 H 1.48497 * 109.47125 * 330.00482 * 16 14 12 20 20 C 1.38878 * 119.88856 * 359.40669 * 4 3 2 21 21 C 1.38094 * 119.93770 * 0.27179 * 20 4 3 22 22 C 1.38359 * 119.97698 * 179.67190 * 2 1 3 23 23 Cl 1.73605 * 119.93947 * 0.02857 * 22 2 1 24 24 H 1.09006 * 109.47434 * 270.31952 * 1 2 3 25 25 H 1.08996 * 109.47603 * 30.32259 * 1 2 3 26 26 H 1.09004 * 109.46500 * 150.32488 * 1 2 3 27 27 H 1.07998 * 120.03114 * 359.97438 * 3 2 1 28 28 H 0.97005 * 119.99587 * 34.82297 * 5 4 3 29 29 H 0.96999 * 119.99754 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47337 * 299.99982 * 11 9 8 31 31 H 1.09001 * 109.47211 * 59.99864 * 11 9 8 32 32 H 1.08999 * 109.47556 * 179.97438 * 11 9 8 33 33 H 0.96997 * 119.99984 * 179.97438 * 15 14 12 34 34 H 1.07995 * 120.03116 * 180.29213 * 20 4 3 35 35 H 1.08002 * 119.96809 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1966 0.0000 4 6 3.5853 1.1960 -0.0062 5 7 4.2872 2.4074 -0.0131 6 6 5.4511 2.5081 -0.6849 7 8 5.9342 1.5261 -1.2146 8 7 6.0796 3.6974 -0.7697 9 6 7.3445 3.8069 -1.5004 10 1 7.9210 2.8914 -1.3683 11 6 7.0573 4.0183 -2.9883 12 6 8.1316 4.9773 -0.9696 13 1 7.7299 5.5791 -0.1678 14 6 9.3622 5.2830 -1.5111 15 7 9.8516 4.5499 -2.4872 16 14 10.3344 6.7383 -0.8583 17 1 11.2120 6.2893 0.2524 18 1 11.1673 7.3064 -1.9486 19 1 9.3968 7.7763 -0.3596 20 6 4.2769 -0.0084 0.0002 21 6 3.5822 -1.2019 0.0069 22 6 2.1982 -1.1985 0.0069 23 17 1.3280 -2.7007 0.0147 24 1 -0.3634 0.0057 1.0277 25 1 -0.3634 0.8870 -0.5188 26 1 -0.3632 -0.8929 -0.5088 27 1 1.6570 2.1319 -0.0004 28 1 3.9356 3.1743 0.4658 29 1 5.6943 4.4807 -0.3469 30 1 6.4880 3.1718 -3.3723 31 1 6.4808 4.9338 -3.1207 32 1 7.9984 4.1002 -3.5320 33 1 10.7172 4.7651 -2.8684 34 1 5.3568 -0.0116 0.0002 35 1 4.1195 -2.1388 0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594201272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:16 Heat of formation + Delta-G solvation = -18.714786 kcal Electronic energy + Delta-G solvation = -19175.414867 eV Core-core repulsion = 16005.979099 eV Total energy + Delta-G solvation = -3169.435768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34559 -38.73678 -36.52856 -35.18714 -34.26200 -32.76456 -32.28164 -29.87050 -28.29192 -26.90436 -25.29416 -22.85302 -22.42443 -20.74188 -19.83396 -18.31171 -17.24502 -16.60170 -15.99658 -15.61692 -15.03320 -14.60548 -14.28114 -14.16281 -13.94503 -13.40345 -13.08333 -12.61390 -12.53195 -12.42729 -12.15450 -11.93253 -11.61376 -11.44086 -11.12178 -11.02728 -10.81979 -10.75984 -10.35652 -10.27212 -9.91560 -9.46043 -9.10118 -8.82136 -8.60642 -8.15547 -7.77793 -6.16706 -4.26287 1.16766 1.29787 2.15280 3.07343 3.21983 3.29048 3.30856 3.48889 3.89337 4.28510 4.70285 4.72309 4.84306 5.13282 5.16021 5.34711 5.42399 5.45470 5.59237 5.71265 5.92993 6.12367 6.33775 6.35757 6.53958 6.75249 6.93330 7.04376 7.06925 7.17154 7.39177 7.57474 7.77394 7.93449 8.10692 8.66238 8.78130 9.15055 9.41869 10.89313 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.045723 B = 0.003099 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.242060 B = 9033.309933 C = 9273.281213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.148 4.148 4 C 0.192 3.808 5 N -0.696 5.696 6 C 0.692 3.308 7 O -0.580 6.580 8 N -0.717 5.717 9 C 0.280 3.720 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.063 4.063 23 Cl -0.081 7.081 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.404 0.596 29 H 0.387 0.613 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.962 -6.900 6.236 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.169 4.169 4 C 0.095 3.905 5 N -0.344 5.344 6 C 0.393 3.607 7 O -0.458 6.458 8 N -0.368 5.368 9 C 0.178 3.822 10 H 0.068 0.932 11 C -0.207 4.207 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.136 4.136 21 C -0.106 4.106 22 C -0.091 4.091 23 Cl -0.052 7.052 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.149 0.851 28 H 0.239 0.761 29 H 0.219 0.781 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.170 0.830 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.294 -7.837 5.559 18.916 hybrid contribution 0.181 1.471 0.671 1.627 sum -16.113 -6.365 6.229 18.411 Atomic orbital electron populations 1.20833 0.90377 1.03337 1.02698 1.19415 0.96321 0.90809 0.99504 1.20662 0.92041 0.97762 1.06422 1.17610 0.90209 0.85826 0.96902 1.42888 1.23958 1.12533 1.54996 1.16167 0.79835 0.85287 0.79448 1.90877 1.66296 1.36464 1.52145 1.45886 1.26436 1.07386 1.57074 1.18704 0.77600 0.98121 0.87733 0.93205 1.22109 1.02063 0.97082 0.99477 1.21200 1.03181 1.13454 1.19554 0.92051 1.24883 0.97224 0.96835 0.94738 1.69904 1.18669 1.38699 1.24699 0.86423 0.79882 0.82094 0.78536 1.20527 1.21034 1.19862 1.21410 1.02101 0.89926 1.00207 1.20944 0.91562 0.98957 0.99109 1.20687 0.92243 0.86194 1.09929 1.98328 1.76933 1.32775 1.97176 0.90820 0.91224 0.90877 0.85067 0.76094 0.78096 0.96563 0.95499 0.89019 0.92490 0.82958 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.61 36.00 0.35 -0.65 16 2 C -0.06 -0.68 5.88 -104.62 -0.62 -1.29 16 3 C -0.15 -1.74 9.62 -39.40 -0.38 -2.12 16 4 C 0.19 2.77 6.30 -83.66 -0.53 2.24 16 5 N -0.70 -10.19 5.35 -14.21 -0.08 -10.27 16 6 C 0.69 13.54 8.37 -86.92 -0.73 12.81 16 7 O -0.58 -13.56 13.44 5.29 0.07 -13.49 16 8 N -0.72 -14.40 5.07 -59.82 -0.30 -14.70 16 9 C 0.28 6.98 2.56 -69.08 -0.18 6.80 16 10 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 11 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 12 C -0.54 -13.87 8.73 -34.44 -0.30 -14.17 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 15 N -0.88 -24.50 11.31 55.43 0.63 -23.87 16 16 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C -0.12 -1.78 8.69 -39.40 -0.34 -2.13 16 21 C -0.09 -1.15 9.82 -39.58 -0.39 -1.54 16 22 C -0.06 -0.78 6.31 -39.48 -0.25 -1.03 16 23 Cl -0.08 -0.88 27.28 -51.86 -1.41 -2.30 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.40 4.43 8.84 -40.82 -0.36 4.07 16 29 H 0.39 6.55 8.56 -40.82 -0.35 6.21 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.15 2.69 6.22 -52.49 -0.33 2.36 16 35 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -29.99 312.60 -8.70 -38.68 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -4.18 Total: 8.69 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.11 Total: -2.72 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.25 Total: -48.84 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.07 Total: -13.49 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.41 Total: -2.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.99 -8.70 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594201272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.970 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds