Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99746 * 2 1 4 4 N 1.46496 * 109.47259 * 124.99660 * 3 2 1 5 5 C 1.46507 * 119.99953 * 274.99703 * 4 3 2 6 6 C 1.50693 * 109.47266 * 274.99987 * 5 4 3 7 7 H 1.08001 * 120.00263 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00114 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99965 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00002 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47401 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47288 * 119.99334 * 10 8 6 13 13 H 1.48506 * 109.47025 * 239.99682 * 10 8 6 14 14 S 1.65607 * 120.00092 * 94.99837 * 4 3 2 15 15 O 1.42102 * 106.40086 * 156.46240 * 14 4 3 16 16 O 1.42090 * 106.39977 * 23.54117 * 14 4 3 17 17 C 1.76203 * 107.21636 * 269.99693 * 14 4 3 18 18 C 1.38654 * 120.78365 * 89.99984 * 17 14 4 19 19 C 1.38209 * 119.15786 * 180.02562 * 18 17 14 20 20 N 1.31870 * 120.76375 * 0.26353 * 19 18 17 21 21 C 1.31872 * 121.72489 * 359.46946 * 20 19 18 22 22 C 1.38200 * 120.76402 * 0.52682 * 21 20 19 23 23 H 1.08004 * 119.99716 * 179.97438 * 1 2 3 24 24 H 1.07995 * 120.00142 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00005 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47313 * 4.99389 * 3 2 1 27 27 H 1.08998 * 109.47110 * 244.99532 * 3 2 1 28 28 H 1.08997 * 109.46812 * 35.00659 * 5 4 3 29 29 H 1.09007 * 109.46757 * 154.99870 * 5 4 3 30 30 H 0.96998 * 120.00350 * 180.02562 * 9 8 6 31 31 H 1.07995 * 120.42251 * 0.04485 * 18 17 14 32 32 H 1.08002 * 119.61346 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.61160 * 180.27376 * 21 20 19 34 34 H 1.08003 * 120.41583 * 179.72635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5282 1.7623 2.4523 6 6 2.5988 3.2648 2.5449 7 1 2.9551 3.8415 1.7042 8 6 2.2095 3.9031 3.7033 9 7 1.7761 3.2009 4.7272 10 14 2.2964 5.7656 3.8178 11 1 2.8140 6.3166 2.5396 12 1 0.9392 6.3094 4.0781 13 1 3.2054 6.1515 4.9269 14 16 4.5712 0.8760 0.9174 15 8 5.3146 1.5048 1.9525 16 8 4.8567 1.0545 -0.4630 17 6 4.6594 -0.8569 1.2239 18 6 4.4767 -1.7695 0.1961 19 6 4.5525 -3.1212 0.4744 20 7 4.7900 -3.5452 1.7003 21 6 4.9737 -2.7060 2.7008 22 6 4.9124 -1.3403 2.4984 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4026 -0.9313 28 1 1.4981 1.4372 2.5982 29 1 3.1611 1.3207 3.2221 30 1 1.5019 3.6500 5.5421 31 1 4.2780 -1.4285 -0.8091 32 1 4.4109 -3.8384 -0.3205 33 1 5.1705 -3.0907 3.6907 34 1 5.0594 -0.6582 3.3228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594776103.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = -9.539364 kcal Electronic energy + Delta-G solvation = -20335.337866 eV Core-core repulsion = 17168.343681 eV Total energy + Delta-G solvation = -3166.994186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07307 -36.87060 -36.45481 -35.36026 -33.28636 -32.73364 -31.96889 -31.34837 -27.56546 -25.04181 -24.08888 -23.62026 -22.36647 -19.90944 -18.87021 -17.79338 -16.81602 -16.63200 -16.39596 -15.74495 -15.61240 -14.87941 -14.55238 -14.45730 -14.05640 -13.80604 -13.68498 -13.11671 -12.51362 -12.24826 -11.97840 -11.79568 -11.59310 -11.37768 -11.22388 -11.19442 -11.00301 -10.77533 -10.61536 -10.33887 -10.07044 -9.84019 -9.59623 -9.27762 -9.19391 -8.50130 -8.21820 -6.11818 -4.16136 0.57537 0.89955 1.00047 2.46966 3.28221 3.36221 3.39763 3.44101 3.70803 4.17022 4.30350 4.39812 4.43795 4.87734 5.00022 5.11352 5.18978 5.24108 5.36023 5.37139 5.54848 5.56808 5.65412 5.86557 6.03907 6.19075 6.36912 6.53237 6.80124 6.91041 7.15375 7.29051 7.48581 7.73420 7.85304 8.12532 8.86521 9.49497 10.96868 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.006282 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.705222 B = 4456.172118 C = 4807.880577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.144 3.856 4 N -0.972 5.972 5 C 0.256 3.744 6 C -0.529 4.529 7 H 0.063 0.937 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.282 1.282 14 S 2.682 3.318 15 O -0.934 6.934 16 O -0.969 6.969 17 C -0.628 4.628 18 C -0.078 4.078 19 C 0.076 3.924 20 N -0.454 5.454 21 C 0.081 3.919 22 C -0.068 4.068 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -10.328 -7.749 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.019 3.981 4 N -0.812 5.812 5 C 0.134 3.866 6 C -0.569 4.569 7 H 0.081 0.919 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 S 2.768 3.232 15 O -0.924 6.924 16 O -0.959 6.959 17 C -0.718 4.718 18 C -0.099 4.099 19 C -0.081 4.081 20 N -0.163 5.163 21 C -0.076 4.076 22 C -0.088 4.088 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.955 -10.702 -7.607 13.275 hybrid contribution -0.379 1.041 0.335 1.157 sum 1.576 -9.661 -7.273 12.195 Atomic orbital electron populations 1.23803 0.95784 1.01764 1.00192 1.23472 0.96720 0.98961 1.00227 1.20420 0.93294 0.95576 0.88856 1.57433 1.26962 1.78204 1.18563 1.19152 0.96405 0.95402 0.75635 1.21495 1.43810 0.91580 1.00004 0.91905 1.24922 0.94875 0.98757 0.95361 1.69921 1.43655 1.35618 1.04143 0.86454 0.77620 0.85091 0.78364 1.19574 1.20964 1.20773 1.02531 0.73871 0.73249 0.73576 1.93624 1.69064 1.71916 1.57758 1.93510 1.83919 1.85167 1.33331 1.32255 1.10047 1.29023 1.00504 1.21921 0.94395 0.94275 0.99306 1.22861 0.96907 0.94130 0.94222 1.67679 1.07972 1.40208 1.00433 1.22926 0.96512 0.89813 0.98391 1.22058 0.92606 0.97962 0.96205 0.88917 0.88088 0.88172 0.88615 0.89247 0.94252 0.94339 0.92672 0.83275 0.82087 0.81815 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 29.02 0.42 -1.90 16 2 C -0.17 -2.48 9.84 -36.03 -0.35 -2.83 16 3 C 0.14 2.38 6.12 -5.20 -0.03 2.34 16 4 N -0.97 -19.07 2.75 -116.95 -0.32 -19.39 16 5 C 0.26 6.08 5.10 -5.19 -0.03 6.05 16 6 C -0.53 -14.22 9.38 -34.44 -0.32 -14.54 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 10 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 S 2.68 50.75 5.67 -107.50 -0.61 50.14 16 15 O -0.93 -20.97 16.36 -57.17 -0.94 -21.91 16 16 O -0.97 -18.66 15.94 -57.17 -0.91 -19.57 16 17 C -0.63 -9.90 6.01 -39.28 -0.24 -10.14 16 18 C -0.08 -1.04 9.01 -39.44 -0.36 -1.40 16 19 C 0.08 0.93 11.18 -17.55 -0.20 0.74 16 20 N -0.45 -6.21 10.36 -13.25 -0.14 -6.35 16 21 C 0.08 1.08 11.18 -17.55 -0.20 0.88 16 22 C -0.07 -1.01 9.61 -39.45 -0.38 -1.39 16 23 H 0.09 1.05 8.06 -52.48 -0.42 0.62 16 24 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 25 H 0.10 1.32 7.45 -52.49 -0.39 0.93 16 26 H 0.10 1.60 7.76 -51.93 -0.40 1.20 16 27 H 0.09 1.35 6.91 -51.93 -0.36 0.99 16 28 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.15 1.69 7.72 -52.49 -0.41 1.28 16 32 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.16 2.27 7.72 -52.48 -0.41 1.87 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -32.30 313.85 -8.25 -40.55 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.00 Total: 0.71 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.78 Total: -20.54 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.28 Total: -50.30 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.85 Total: -41.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 50.75 SS G_CDS: -0.61 Total: 50.14 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.30 -8.25 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594776103.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.012 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds