Wall clock time and date at job start Tue Mar 31 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47110 * 240.00331 * 3 2 1 5 5 H 1.48501 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47059 * 120.00403 * 3 2 1 7 7 C 1.37880 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99698 * 173.69098 * 7 2 1 9 9 C 1.50703 * 120.00198 * 353.69292 * 7 2 1 10 10 C 1.52997 * 115.54871 * 85.65541 * 9 7 2 11 11 S 1.81403 * 109.47193 * 65.33359 * 10 9 7 12 12 C 1.81399 * 102.99945 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.46926 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46852 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47100 * 180.02562 * 14 13 12 16 16 C 1.38418 * 122.54173 * 89.99471 * 15 14 13 17 17 C 1.33386 * 114.92495 * 179.97438 * 16 15 14 18 18 S 1.75890 * 109.59068 * 359.97438 * 17 16 15 19 19 C 1.33388 * 122.53716 * 269.97545 * 15 14 13 20 20 C 1.53003 * 117.49659 * 231.32565 * 9 7 2 21 21 C 1.52995 * 117.49828 * 299.98632 * 9 7 2 22 22 H 0.97003 * 119.99270 * 354.96655 * 1 2 3 23 23 H 1.08995 * 109.47185 * 305.33484 * 10 9 7 24 24 H 1.09004 * 109.47103 * 185.32966 * 10 9 7 25 25 H 1.09001 * 109.47089 * 59.99995 * 12 11 10 26 26 H 1.09004 * 109.47246 * 299.99442 * 12 11 10 27 27 H 1.09001 * 109.47147 * 60.00146 * 13 12 11 28 28 H 1.09000 * 109.47501 * 299.99753 * 13 12 11 29 29 H 1.09001 * 109.47218 * 60.00076 * 14 13 12 30 30 H 1.09004 * 109.47191 * 299.99478 * 14 13 12 31 31 H 1.08004 * 122.53845 * 359.71265 * 16 15 14 32 32 H 1.07998 * 125.21110 * 179.97438 * 17 16 15 33 33 H 1.07997 * 125.20138 * 0.06068 * 19 15 14 34 34 H 1.09005 * 117.49464 * 215.00332 * 20 9 7 35 35 H 1.09001 * 117.49929 * 0.02562 * 20 9 7 36 36 H 1.09002 * 117.50134 * 359.97068 * 21 9 7 37 37 H 1.08996 * 117.50194 * 144.97759 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1033 9 6 1.2576 -2.4953 0.1423 10 6 0.7094 -3.0876 -1.1576 11 16 2.0893 -3.5544 -2.2386 12 6 1.2526 -4.2250 -3.7018 13 6 2.2972 -4.6708 -4.7270 14 6 1.5915 -5.2358 -5.9614 15 6 2.6203 -5.6755 -6.9710 16 6 3.1436 -6.9568 -6.9912 17 6 4.0435 -7.1814 -7.9498 18 16 4.2695 -5.7192 -8.9009 19 6 3.0953 -4.8595 -7.9132 20 6 1.7406 -3.4729 1.2156 21 6 0.4338 -2.7010 1.4150 22 1 -0.4849 0.8369 0.0737 23 1 0.0882 -2.3467 -1.6608 24 1 0.1110 -3.9700 -0.9308 25 1 0.6175 -3.4560 -4.1415 26 1 0.6409 -5.0790 -3.4110 27 1 2.9326 -5.4397 -4.2876 28 1 2.9086 -3.8166 -5.0178 29 1 0.9563 -4.4666 -6.4007 30 1 0.9798 -6.0900 -5.6710 31 1 2.8488 -7.7159 -6.2817 32 1 4.5551 -8.1178 -8.1166 33 1 2.8036 -3.8285 -8.0487 34 1 1.6678 -4.5380 0.9956 35 1 2.5982 -3.1747 1.8187 36 1 0.4323 -1.8955 2.1493 37 1 -0.4988 -3.2580 1.3263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596354772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:23 Heat of formation + Delta-G solvation = 36.392313 kcal Electronic energy + Delta-G solvation = -16605.258160 eV Core-core repulsion = 13986.548936 eV Total energy + Delta-G solvation = -2618.709224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.62419 -36.53705 -34.25410 -31.90938 -30.00442 -27.71597 -26.97838 -25.28175 -23.35900 -21.52784 -21.09248 -19.12771 -18.86101 -17.75099 -16.20575 -15.73503 -15.09843 -14.83217 -14.59085 -13.99103 -13.74637 -13.39887 -13.19664 -13.02460 -12.84951 -12.63121 -12.16596 -11.82298 -11.71432 -11.52770 -11.15073 -10.95505 -10.85617 -10.76327 -10.64265 -10.45064 -10.14502 -9.61232 -9.22024 -8.95191 -8.79455 -8.51233 -8.40704 -7.98271 -6.75754 -6.02133 -4.07056 0.85336 1.51094 1.82929 2.38924 2.63160 3.34527 3.38169 3.42317 3.57696 4.44438 4.68717 4.82133 5.01745 5.15660 5.27051 5.33052 5.36202 5.41594 5.47772 5.55293 5.73643 5.86085 5.89655 6.00416 6.08902 6.24458 6.26849 6.36022 6.41276 6.42692 6.55952 6.75944 6.83864 7.08438 7.42985 7.51217 7.91127 8.42904 8.94530 9.58831 11.07065 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003110 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.284957 B = 9000.314550 C = 9690.285280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.024 4.024 11 S -0.253 6.253 12 C -0.100 4.100 13 C -0.092 4.092 14 C -0.058 4.058 15 C -0.095 4.095 16 C -0.128 4.128 17 C -0.214 4.214 18 S 0.080 5.920 19 C -0.209 4.209 20 C -0.205 4.205 21 C -0.149 4.149 22 H 0.260 0.740 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -12.519 -14.706 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.055 3.945 10 C -0.173 4.173 11 S -0.024 6.024 12 C -0.248 4.248 13 C -0.131 4.131 14 C -0.099 4.099 15 C -0.108 4.108 16 C -0.158 4.158 17 C -0.349 4.349 18 S 0.344 5.656 19 C -0.345 4.345 20 C -0.242 4.242 21 C -0.189 4.189 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.137 -11.904 -15.878 20.498 hybrid contribution -1.864 0.456 1.048 2.186 sum 3.273 -11.447 -14.830 19.018 Atomic orbital electron populations 1.70006 1.05864 1.26856 1.49254 1.24941 0.94777 0.98857 0.94537 0.86715 0.79728 0.83164 0.78813 1.19994 1.21385 1.20277 1.20365 0.92923 0.88512 1.50374 0.92030 1.18436 0.98020 0.93864 0.84226 1.23058 0.95306 1.00245 0.98648 1.86871 1.18663 1.80457 1.16387 1.23333 1.00969 1.02547 0.97979 1.21244 0.97281 1.01366 0.93161 1.20380 0.95269 1.01080 0.93189 1.18988 1.00496 0.93391 0.97899 1.20149 0.98458 0.97304 0.99939 1.25575 1.05516 1.02100 1.01696 1.84245 1.42482 1.04250 1.34670 1.25500 1.03690 1.03995 1.01272 1.23016 0.98364 0.95807 1.07050 1.22576 0.92191 1.01198 1.02967 0.93068 0.89956 0.93594 0.90782 0.91205 0.91134 0.90967 0.90818 0.90802 0.84182 0.81997 0.81834 0.91456 0.90310 0.89826 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 12.90 55.43 0.71 -24.09 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.48 -13.25 8.49 -34.44 -0.29 -13.54 16 8 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 9 C 0.06 1.38 1.34 -155.66 -0.21 1.17 16 10 C -0.02 -0.55 5.80 37.16 0.22 -0.33 16 11 S -0.25 -5.11 21.43 -107.50 -2.30 -7.41 16 12 C -0.10 -1.51 5.94 37.16 0.22 -1.29 16 13 C -0.09 -1.18 5.20 -26.73 -0.14 -1.31 16 14 C -0.06 -0.60 5.47 -27.88 -0.15 -0.75 16 15 C -0.10 -1.01 5.06 -106.25 -0.54 -1.54 16 16 C -0.13 -1.25 9.98 -41.21 -0.41 -1.66 16 17 C -0.21 -1.92 11.23 29.04 0.33 -1.59 16 18 S 0.08 0.74 23.34 -107.50 -2.51 -1.77 16 19 C -0.21 -2.14 10.98 29.04 0.32 -1.82 16 20 C -0.20 -4.54 9.96 -26.69 -0.27 -4.80 16 21 C -0.15 -3.49 9.40 -26.69 -0.25 -3.74 16 22 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 23 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 24 H 0.05 0.95 8.09 -51.92 -0.42 0.53 16 25 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 26 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -28.55 340.69 -11.14 -39.69 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.88 Total: 1.50 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -1.27 Total: -29.34 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.71 Total: -24.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -4.81 Total: -9.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.55 -11.14 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596354772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.087 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds