Wall clock time and date at job start Tue Mar 31 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47110 * 240.00331 * 3 2 1 5 5 H 1.48501 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47059 * 120.00403 * 3 2 1 7 7 C 1.37880 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99698 * 173.69098 * 7 2 1 9 9 C 1.50703 * 120.00198 * 353.69292 * 7 2 1 10 10 C 1.52997 * 115.54871 * 85.65541 * 9 7 2 11 11 S 1.81403 * 109.47193 * 65.33359 * 10 9 7 12 12 C 1.81399 * 102.99945 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.46926 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46852 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47100 * 180.02562 * 14 13 12 16 16 C 1.38418 * 122.54173 * 89.99471 * 15 14 13 17 17 C 1.33386 * 114.92495 * 179.97438 * 16 15 14 18 18 S 1.75890 * 109.59068 * 359.97438 * 17 16 15 19 19 C 1.33388 * 122.53716 * 269.97545 * 15 14 13 20 20 C 1.53003 * 117.49659 * 231.32565 * 9 7 2 21 21 C 1.52995 * 117.49828 * 299.98632 * 9 7 2 22 22 H 0.97003 * 119.99270 * 354.96655 * 1 2 3 23 23 H 1.08995 * 109.47185 * 305.33484 * 10 9 7 24 24 H 1.09004 * 109.47103 * 185.32966 * 10 9 7 25 25 H 1.09001 * 109.47089 * 59.99995 * 12 11 10 26 26 H 1.09004 * 109.47246 * 299.99442 * 12 11 10 27 27 H 1.09001 * 109.47147 * 60.00146 * 13 12 11 28 28 H 1.09000 * 109.47501 * 299.99753 * 13 12 11 29 29 H 1.09001 * 109.47218 * 60.00076 * 14 13 12 30 30 H 1.09004 * 109.47191 * 299.99478 * 14 13 12 31 31 H 1.08004 * 122.53845 * 359.71265 * 16 15 14 32 32 H 1.07998 * 125.21110 * 179.97438 * 17 16 15 33 33 H 1.07997 * 125.20138 * 0.06068 * 19 15 14 34 34 H 1.09005 * 117.49464 * 215.00332 * 20 9 7 35 35 H 1.09001 * 117.49929 * 0.02562 * 20 9 7 36 36 H 1.09002 * 117.50134 * 359.97068 * 21 9 7 37 37 H 1.08996 * 117.50194 * 144.97759 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1033 9 6 1.2576 -2.4953 0.1423 10 6 0.7094 -3.0876 -1.1576 11 16 2.0893 -3.5544 -2.2386 12 6 1.2526 -4.2250 -3.7018 13 6 2.2972 -4.6708 -4.7270 14 6 1.5915 -5.2358 -5.9614 15 6 2.6203 -5.6755 -6.9710 16 6 3.1436 -6.9568 -6.9912 17 6 4.0435 -7.1814 -7.9498 18 16 4.2695 -5.7192 -8.9009 19 6 3.0953 -4.8595 -7.9132 20 6 1.7406 -3.4729 1.2156 21 6 0.4338 -2.7010 1.4150 22 1 -0.4849 0.8369 0.0737 23 1 0.0882 -2.3467 -1.6608 24 1 0.1110 -3.9700 -0.9308 25 1 0.6175 -3.4560 -4.1415 26 1 0.6409 -5.0790 -3.4110 27 1 2.9326 -5.4397 -4.2876 28 1 2.9086 -3.8166 -5.0178 29 1 0.9563 -4.4666 -6.4007 30 1 0.9798 -6.0900 -5.6710 31 1 2.8488 -7.7159 -6.2817 32 1 4.5551 -8.1178 -8.1166 33 1 2.8036 -3.8285 -8.0487 34 1 1.6678 -4.5380 0.9956 35 1 2.5982 -3.1747 1.8187 36 1 0.4323 -1.8955 2.1493 37 1 -0.4988 -3.2580 1.3263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596354772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:23 Heat of formation + Delta-G solvation = 24.802232 kcal Electronic energy + Delta-G solvation = -16605.760743 eV Core-core repulsion = 13986.548936 eV Total energy + Delta-G solvation = -2619.211808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37956 -38.40390 -35.23926 -33.98643 -30.82924 -29.44653 -27.98381 -27.30836 -24.20184 -22.91993 -22.52275 -21.02840 -19.59902 -18.49430 -18.12314 -16.89301 -16.63789 -16.34181 -15.87142 -15.65812 -15.05423 -14.94615 -14.27938 -14.09612 -13.87392 -13.68379 -13.54684 -13.32669 -13.01341 -12.84262 -12.77121 -12.49442 -12.47840 -12.26742 -11.97075 -11.68698 -11.57310 -11.44012 -10.86319 -10.66348 -10.43491 -9.83867 -9.67696 -9.24823 -8.37482 -8.10307 -6.20203 0.12519 0.80045 0.95866 1.12048 1.42320 1.43080 1.50299 1.82200 2.01801 2.44527 3.18443 3.55105 3.83974 3.94444 4.13916 4.21315 4.31624 4.42492 4.44935 4.47781 4.61999 4.65674 4.68893 4.71955 4.74586 4.90808 4.95843 5.00908 5.04973 5.19964 5.23641 5.31279 5.56289 5.60562 5.63476 5.63551 5.78496 6.40242 6.83682 7.47566 8.97780 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003110 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.284957 B = 9000.314550 C = 9690.285280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.498 4.498 8 H 0.046 0.954 9 C 0.028 3.972 10 C -0.013 4.013 11 S -0.292 6.292 12 C -0.082 4.082 13 C -0.082 4.082 14 C -0.049 4.049 15 C -0.106 4.106 16 C -0.143 4.143 17 C -0.213 4.213 18 S 0.084 5.916 19 C -0.225 4.225 20 C -0.183 4.183 21 C -0.151 4.151 22 H 0.260 0.740 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -13.814 -15.613 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.162 4.162 11 S -0.063 6.063 12 C -0.230 4.230 13 C -0.121 4.121 14 C -0.090 4.090 15 C -0.119 4.119 16 C -0.173 4.173 17 C -0.348 4.348 18 S 0.347 5.653 19 C -0.360 4.360 20 C -0.220 4.220 21 C -0.191 4.191 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.202 0.798 33 H 0.187 0.813 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.378 -13.200 -16.775 22.013 hybrid contribution -1.894 0.803 1.254 2.409 sum 3.484 -12.397 -15.521 20.167 Atomic orbital electron populations 1.70090 1.06808 1.27389 1.50114 1.25559 0.95524 1.01544 0.94454 0.85857 0.78668 0.79914 0.78710 1.20004 1.20846 1.19854 1.20555 0.92440 0.90277 1.50268 0.93593 1.18545 0.99096 0.93995 0.85672 1.22756 0.95559 0.99922 0.97923 1.86894 1.19377 1.80992 1.19054 1.23406 1.01252 1.02824 0.95565 1.21164 0.96644 1.00839 0.93490 1.20290 0.95201 1.01633 0.91915 1.19094 1.00792 0.93930 0.98071 1.20355 0.98866 0.97398 1.00662 1.25911 1.05126 1.02713 1.01048 1.84232 1.42017 1.04488 1.34529 1.25719 1.04120 1.04537 1.01658 1.22995 0.97385 0.96600 1.05062 1.22507 0.93495 1.01134 1.01986 0.93146 0.92877 0.91833 0.90724 0.89311 0.91247 0.92294 0.90324 0.89364 0.82849 0.79805 0.81289 0.89074 0.90605 0.91961 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 12.90 21.45 0.28 -51.16 16 2 C 0.03 1.62 5.39 84.66 0.46 2.08 16 3 Si 0.94 44.03 29.55 68.60 2.03 46.06 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.50 -27.53 8.49 25.60 0.22 -27.31 16 8 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 9 C 0.03 1.39 1.34 -52.93 -0.07 1.32 16 10 C -0.01 -0.59 5.80 71.98 0.42 -0.17 16 11 S -0.29 -11.62 21.43 -56.49 -1.21 -12.83 16 12 C -0.08 -2.35 5.94 71.98 0.43 -1.92 16 13 C -0.08 -1.98 5.20 30.60 0.16 -1.82 16 14 C -0.05 -0.91 5.47 29.85 0.16 -0.75 16 15 C -0.11 -2.05 5.06 -20.92 -0.11 -2.16 16 16 C -0.14 -2.48 9.98 21.21 0.21 -2.27 16 17 C -0.21 -3.37 11.23 66.72 0.75 -2.62 16 18 S 0.08 1.43 23.34 -56.49 -1.32 0.11 16 19 C -0.23 -4.31 10.98 66.72 0.73 -3.58 16 20 C -0.18 -7.90 9.96 30.62 0.30 -7.60 16 21 C -0.15 -7.02 9.40 30.62 0.29 -6.74 16 22 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 23 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.06 2.54 8.09 -2.39 -0.02 2.52 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 30 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -60.59 340.69 4.75 -55.84 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.02 Total: 15.52 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 3.95 Total: -53.53 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.28 Total: -51.16 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -2.53 Total: -12.72 kcal Total: -60.59 4.75 -55.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596354772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.642 kcal (2) G-P(sol) polarization free energy of solvation -60.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds