Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86812 * 119.99696 * 2 1 4 4 H 1.48500 * 109.46883 * 239.99353 * 3 2 1 5 5 H 1.48494 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46803 * 119.99834 * 3 2 1 7 7 C 1.37874 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99701 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99853 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49523 * 59.93418 * 9 7 2 11 11 C 1.53046 * 109.49571 * 179.97438 * 9 7 2 12 12 C 1.53034 * 109.53805 * 181.35045 * 11 9 7 13 13 C 1.53197 * 109.31265 * 298.63525 * 12 11 9 14 14 N 1.46928 * 108.77549 * 54.63242 * 13 12 11 15 15 C 1.34779 * 120.62906 * 126.37047 * 14 13 12 16 16 O 1.21693 * 120.00046 * 186.78967 * 15 14 13 17 17 C 1.46671 * 119.99723 * 6.79087 * 15 14 13 18 18 C 1.37902 * 126.21974 * 203.98437 * 17 15 14 19 19 C 1.39884 * 107.09493 * 180.13431 * 18 17 15 20 20 Cl 1.73594 * 126.07579 * 179.89780 * 19 18 17 21 21 C 1.35522 * 107.85025 * 359.63341 * 19 18 17 22 22 N 1.35631 * 108.85346 * 0.22963 * 21 19 18 23 23 H 0.96998 * 125.68135 * 180.02562 * 22 21 19 24 24 C 1.46925 * 118.73988 * 306.64596 * 14 13 12 25 25 H 0.97002 * 120.00384 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.45912 * 61.32677 * 11 9 7 27 27 H 1.09000 * 109.45747 * 301.36760 * 11 9 7 28 28 H 1.09000 * 109.49986 * 178.68252 * 12 11 9 29 29 H 1.08997 * 109.49889 * 58.58061 * 12 11 9 30 30 H 1.08998 * 109.58353 * 294.84998 * 13 12 11 31 31 H 1.08998 * 109.58533 * 174.42449 * 13 12 11 32 32 H 1.08003 * 126.45061 * 359.97438 * 18 17 15 33 33 H 1.07999 * 125.57510 * 180.25035 * 21 19 18 34 34 H 1.09001 * 109.58839 * 173.14198 * 24 14 13 35 35 H 1.08997 * 109.58580 * 293.56840 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6237 -2.5569 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4812 -4.9884 -0.0335 13 6 0.6053 -5.1007 1.2184 14 7 -0.2533 -3.9114 1.3030 15 6 -1.5898 -4.0366 1.4240 16 8 -2.3007 -3.0505 1.3690 17 6 -2.1873 -5.3614 1.6220 18 6 -3.4798 -5.7272 1.3102 19 6 -3.6234 -7.0726 1.6652 20 17 -5.0606 -8.0294 1.4855 21 6 -2.4394 -7.4979 2.1689 22 7 -1.5584 -6.4669 2.1480 23 1 -0.6381 -6.5028 2.4525 24 6 0.3721 -2.5831 1.2471 25 1 -0.4851 0.8400 -0.0004 26 1 2.8559 -3.6186 0.9022 27 1 2.8877 -3.5914 -0.8770 28 1 2.1899 -5.8162 -0.0571 29 1 0.8513 -5.0226 -0.9223 30 1 1.2388 -5.1577 2.1036 31 1 -0.0144 -5.9949 1.1517 32 1 -4.2391 -5.0934 0.8762 33 1 -2.2312 -8.4950 2.5280 34 1 -0.4014 -1.8167 1.1994 35 1 0.9862 -2.4307 2.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = 10.613837 kcal Electronic energy + Delta-G solvation = -20057.157977 eV Core-core repulsion = 16888.993994 eV Total energy + Delta-G solvation = -3168.163984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51738 -39.00429 -36.78158 -36.41730 -33.55496 -31.95081 -31.06024 -30.04985 -29.05055 -25.19927 -25.04900 -22.08857 -21.94956 -20.78146 -20.14778 -19.19359 -17.47902 -16.36381 -16.03786 -15.17976 -15.07580 -14.50424 -14.43084 -14.02735 -13.66836 -13.63123 -13.03269 -12.90738 -12.82971 -12.67972 -12.27964 -11.97619 -11.86442 -11.06412 -10.95008 -10.86587 -10.60435 -10.49427 -10.30842 -9.98209 -9.57730 -9.19809 -9.03171 -8.87081 -8.48720 -8.30718 -7.86352 -6.03251 -4.13091 1.54720 2.15505 2.45942 3.07997 3.29185 3.35980 3.36876 3.46557 3.78016 4.39569 4.78919 4.84649 4.99933 5.17131 5.26116 5.29787 5.44841 5.56558 5.80597 5.90918 6.02141 6.18562 6.41754 6.49801 6.54664 6.62170 6.76790 6.88568 7.02098 7.13836 7.17751 7.57535 7.80349 7.92398 8.10591 8.32470 8.68143 8.90910 9.53088 11.01916 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.004106 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.380484 B = 6818.143084 C = 7440.415486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.132 4.132 13 C 0.091 3.909 14 N -0.603 5.603 15 C 0.575 3.425 16 O -0.515 6.515 17 C -0.017 4.017 18 C -0.110 4.110 19 C -0.122 4.122 20 Cl -0.055 7.055 21 C 0.021 3.979 22 N -0.533 5.533 23 H 0.427 0.573 24 C 0.113 3.887 25 H 0.265 0.735 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.126 0.874 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -16.691 4.591 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.170 4.170 13 C -0.034 4.034 14 N -0.336 5.336 15 C 0.361 3.639 16 O -0.391 6.391 17 C -0.131 4.131 18 C -0.136 4.136 19 C -0.156 4.156 20 Cl -0.027 7.027 21 C -0.115 4.115 22 N -0.135 5.135 23 H 0.270 0.730 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.173 0.827 33 H 0.194 0.806 34 H 0.143 0.857 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.617 -16.036 4.603 16.887 hybrid contribution 0.809 0.586 0.120 1.006 sum -1.808 -15.449 4.723 16.256 Atomic orbital electron populations 1.69864 1.05731 1.27099 1.48936 1.25056 0.94889 0.99286 0.94733 0.86642 0.79574 0.83126 0.78576 1.20264 1.21195 1.20251 1.21014 0.92865 0.90048 1.52342 0.92374 1.18892 0.92612 0.92351 0.94102 0.95177 1.21633 0.98577 0.93898 1.00724 1.21920 0.98522 0.99381 0.97191 1.22039 0.93831 0.88194 0.99296 1.48477 1.04913 1.09160 1.71061 1.17068 0.82419 0.86134 0.78276 1.90886 1.60359 1.37354 1.50452 1.20779 0.93819 0.88687 1.09778 1.21142 0.95095 0.93751 1.03650 1.19929 0.89406 0.93455 1.12768 1.98312 1.36491 1.70946 1.96943 1.21689 0.89227 0.94007 1.06572 1.42730 1.13207 1.08889 1.48666 0.72964 1.22290 0.98877 0.80728 0.98790 0.92465 0.93134 0.92794 0.92068 0.91863 0.91747 0.90946 0.82717 0.80565 0.85652 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 11.39 55.43 0.63 -24.68 16 2 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.89 8.56 -34.44 -0.29 -14.18 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.95 2.24 -91.87 -0.21 0.74 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 12 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 13 C 0.09 1.28 5.32 -3.71 -0.02 1.26 16 14 N -0.60 -11.56 2.98 -174.57 -0.52 -12.08 16 15 C 0.57 11.49 7.62 -12.86 -0.10 11.39 16 16 O -0.52 -12.63 16.39 5.20 0.09 -12.54 16 17 C -0.02 -0.26 6.38 -81.98 -0.52 -0.79 16 18 C -0.11 -1.66 10.73 -39.09 -0.42 -2.08 16 19 C -0.12 -1.52 6.66 -39.94 -0.27 -1.79 16 20 Cl -0.06 -0.62 29.30 -51.86 -1.52 -2.14 16 21 C 0.02 0.22 11.87 -16.84 -0.20 0.02 16 22 N -0.53 -5.97 4.76 -9.35 -0.04 -6.01 16 23 H 0.43 3.71 6.39 -40.82 -0.26 3.45 16 24 C 0.11 2.64 5.39 -3.93 -0.02 2.61 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.84 4.20 -51.93 -0.22 0.62 16 32 H 0.16 2.37 8.06 -52.48 -0.42 1.94 16 33 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.13 3.47 5.11 -51.93 -0.27 3.20 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -31.10 301.80 -8.37 -39.47 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.09 Total: 3.08 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.44 Total: -5.57 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.07 Total: -42.77 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.52 Total: -2.14 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.10 -8.37 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.083 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds