Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48495 * 109.47476 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47257 * 300.00368 * 3 2 1 6 6 H 1.48504 * 109.46868 * 59.99827 * 3 2 1 7 7 C 1.37875 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00346 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00145 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.49781 * 300.07111 * 9 7 2 11 11 C 1.53031 * 109.49820 * 180.02562 * 9 7 2 12 12 C 1.53042 * 109.53936 * 178.68925 * 11 9 7 13 13 C 1.53190 * 109.31554 * 61.36058 * 12 11 9 14 14 N 1.46928 * 108.77985 * 305.37018 * 13 12 11 15 15 C 1.34770 * 120.63486 * 233.58848 * 14 13 12 16 16 O 1.21690 * 120.00442 * 180.14329 * 15 14 13 17 17 C 1.46672 * 119.99808 * 0.13470 * 15 14 13 18 18 C 1.37892 * 126.22385 * 150.82972 * 17 15 14 19 19 C 1.39888 * 107.10109 * 179.97438 * 18 17 15 20 20 Cl 1.73600 * 126.08082 * 179.97438 * 19 18 17 21 21 C 1.35522 * 107.84416 * 0.24893 * 19 18 17 22 22 N 1.35625 * 108.85680 * 359.59930 * 21 19 18 23 23 H 0.97001 * 125.67951 * 180.15312 * 22 21 19 24 24 C 1.46931 * 118.73331 * 53.85649 * 14 13 12 25 25 H 0.96999 * 120.00317 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46351 * 58.66737 * 11 9 7 27 27 H 1.09003 * 109.45085 * 298.69727 * 11 9 7 28 28 H 1.09009 * 109.49524 * 301.41520 * 12 11 9 29 29 H 1.08996 * 109.50205 * 181.31898 * 12 11 9 30 30 H 1.09001 * 109.59029 * 185.57969 * 13 12 11 31 31 H 1.09004 * 109.70303 * 65.22917 * 13 12 11 32 32 H 1.08003 * 126.45244 * 359.97438 * 18 17 15 33 33 H 1.08002 * 125.56650 * 179.74984 * 21 19 18 34 34 H 1.08990 * 109.58790 * 65.93154 * 24 14 13 35 35 H 1.09004 * 109.58444 * 186.35642 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6237 -2.5571 0.8888 11 6 2.2451 -3.6628 -0.0005 12 6 1.4812 -4.9885 0.0325 13 6 0.6059 -5.1003 -1.2198 14 7 -0.2527 -3.9110 -1.3044 15 6 -1.5890 -4.0361 -1.4269 16 8 -2.2891 -3.0433 -1.4986 17 6 -2.1995 -5.3689 -1.4739 18 6 -3.4672 -5.7001 -1.0441 19 6 -3.6351 -7.0695 -1.2748 20 17 -5.0552 -8.0005 -0.9142 21 6 -2.4897 -7.5415 -1.8244 22 7 -1.6115 -6.5164 -1.9555 23 1 -0.7165 -6.5817 -2.3237 24 6 0.3738 -2.5827 -1.2589 25 1 -0.4850 0.8400 0.0004 26 1 2.8873 -3.5918 0.8773 27 1 2.8561 -3.6182 -0.9021 28 1 0.8508 -5.0231 0.9211 29 1 2.1899 -5.8163 0.0561 30 1 -0.0139 -5.9945 -1.1538 31 1 1.2380 -5.1584 -2.1060 32 1 -4.1938 -5.0286 -0.6109 33 1 -2.3072 -8.5661 -2.1132 34 1 0.9891 -2.4384 -2.1469 35 1 -0.3992 -1.8153 -1.2187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = 11.799218 kcal Electronic energy + Delta-G solvation = -20067.201275 eV Core-core repulsion = 16899.088693 eV Total energy + Delta-G solvation = -3168.112582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52360 -38.99361 -36.77120 -36.41210 -33.53918 -31.94198 -31.08596 -30.03104 -29.04495 -25.20181 -25.04340 -22.08836 -21.93994 -20.79882 -20.15720 -19.17832 -17.50073 -16.36519 -16.06635 -15.17285 -15.06072 -14.49972 -14.43670 -14.02483 -13.67211 -13.63864 -13.05653 -12.88760 -12.80085 -12.67985 -12.24685 -11.98984 -11.85781 -11.07769 -10.96496 -10.86075 -10.58538 -10.46132 -10.31681 -9.98955 -9.58044 -9.21165 -9.02705 -8.85858 -8.49506 -8.29965 -7.86626 -6.04214 -4.13456 1.56827 2.15551 2.47032 3.07142 3.27180 3.36218 3.38825 3.43731 3.78193 4.39398 4.77757 4.84635 5.00254 5.18154 5.25747 5.30526 5.45378 5.57106 5.81120 5.91666 6.02418 6.18520 6.42658 6.49159 6.54443 6.62649 6.76572 6.87693 7.02367 7.12006 7.17306 7.56515 7.79201 7.91761 8.09833 8.31844 8.67818 8.90894 9.52808 11.01301 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.004143 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.284459 B = 6756.055102 C = 7350.319987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.132 4.132 13 C 0.090 3.910 14 N -0.601 5.601 15 C 0.574 3.426 16 O -0.517 6.517 17 C -0.015 4.015 18 C -0.112 4.112 19 C -0.121 4.121 20 Cl -0.055 7.055 21 C 0.020 3.980 22 N -0.533 5.533 23 H 0.427 0.573 24 C 0.113 3.887 25 H 0.264 0.736 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.045 0.955 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -16.799 -3.875 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.170 4.170 13 C -0.035 4.035 14 N -0.334 5.334 15 C 0.361 3.639 16 O -0.393 6.393 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.155 4.155 20 Cl -0.027 7.027 21 C -0.116 4.116 22 N -0.136 5.136 23 H 0.271 0.729 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.194 0.806 34 H 0.063 0.937 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.642 -16.150 -3.957 16.836 hybrid contribution 0.766 0.586 -0.107 0.970 sum -1.876 -15.564 -4.063 16.195 Atomic orbital electron populations 1.69889 1.05750 1.26884 1.49158 1.25059 0.94885 0.99322 0.94740 0.86530 0.80007 0.83741 0.77698 1.19799 1.20931 1.20955 1.21097 0.92942 0.90039 1.52029 0.92270 1.19058 0.92619 0.92366 0.93907 0.95105 1.21633 0.98571 0.93897 1.00730 1.21920 0.98527 0.99366 0.97195 1.22075 0.93857 0.88224 0.99306 1.48496 1.04897 1.09228 1.70735 1.17067 0.82384 0.86266 0.78229 1.90880 1.61131 1.37206 1.50044 1.20757 0.94934 0.87365 1.09827 1.21126 0.95173 0.93731 1.03746 1.19924 0.90487 0.92803 1.12250 1.98312 1.37908 1.72450 1.94023 1.21681 0.89892 0.93911 1.06105 1.42747 1.15232 1.07172 1.48400 0.72927 1.22472 0.98756 0.80689 0.98753 0.92586 0.92793 0.93127 0.91865 0.92097 0.90947 0.91669 0.82752 0.80569 0.93662 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 11.41 55.43 0.63 -24.66 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.95 2.26 -91.43 -0.21 0.74 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.09 5.10 -26.69 -0.14 -2.23 16 12 C -0.13 -1.99 6.08 -26.61 -0.16 -2.15 16 13 C 0.09 1.27 5.57 -3.71 -0.02 1.25 16 14 N -0.60 -11.52 2.97 -174.04 -0.52 -12.04 16 15 C 0.57 11.49 7.63 -12.86 -0.10 11.39 16 16 O -0.52 -12.66 16.42 5.20 0.09 -12.57 16 17 C -0.02 -0.24 6.37 -81.98 -0.52 -0.76 16 18 C -0.11 -1.69 10.76 -39.09 -0.42 -2.11 16 19 C -0.12 -1.52 6.66 -39.93 -0.27 -1.79 16 20 Cl -0.06 -0.63 29.30 -51.86 -1.52 -2.15 16 21 C 0.02 0.21 11.87 -16.85 -0.20 0.01 16 22 N -0.53 -5.97 4.74 -9.35 -0.04 -6.01 16 23 H 0.43 3.67 6.47 -40.82 -0.26 3.41 16 24 C 0.11 2.64 5.43 -3.48 -0.02 2.62 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.83 3.88 -51.93 -0.20 0.63 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.15 2.38 8.06 -52.48 -0.42 1.96 16 33 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.12 3.44 5.15 -51.93 -0.27 3.18 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -31.15 301.94 -8.35 -39.50 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.08 Total: 3.01 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.44 Total: -5.53 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.07 Total: -42.71 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.52 Total: -2.15 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.15 -8.35 -39.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.301 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds