Wall clock time and date at job start Tue Mar 31 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35963 * 116.99740 * 2 1 4 4 C 1.37569 * 120.82206 * 180.29306 * 3 2 1 5 5 C 1.38036 * 114.24729 * 180.21416 * 4 3 2 6 6 C 1.47115 * 127.76073 * 179.79965 * 5 4 3 7 7 O 1.21638 * 120.00269 * 357.24942 * 6 5 4 8 8 N 1.34776 * 120.00131 * 177.51845 * 6 5 4 9 9 C 1.46502 * 119.99945 * 184.84340 * 8 6 5 10 10 C 1.53003 * 109.46990 * 184.38763 * 9 8 6 11 11 C 1.50701 * 115.55122 * 64.91081 * 10 9 8 12 12 H 1.08001 * 119.99603 * 266.87131 * 11 10 9 13 13 C 1.37878 * 119.99937 * 86.86562 * 11 10 9 14 14 N 1.31512 * 119.99496 * 180.90342 * 13 11 10 15 15 Si 1.86803 * 120.00062 * 0.90426 * 13 11 10 16 16 H 1.48501 * 109.47037 * 84.92510 * 15 13 11 17 17 H 1.48500 * 109.47002 * 204.92530 * 15 13 11 18 18 H 1.48498 * 109.47013 * 324.92630 * 15 13 11 19 19 C 1.53004 * 117.50064 * 279.23762 * 10 9 8 20 20 C 1.53004 * 117.49896 * 210.58099 * 10 9 8 21 21 S 1.77235 * 104.48253 * 359.54598 * 5 4 3 22 22 N 1.30356 * 120.82968 * 359.97351 * 3 2 1 23 23 H 1.09006 * 109.47147 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47402 * 300.00332 * 1 2 3 25 25 H 1.08996 * 109.47229 * 60.00446 * 1 2 3 26 26 H 1.07999 * 122.88026 * 0.02562 * 4 3 2 27 27 H 0.96998 * 120.00114 * 4.84792 * 8 6 5 28 28 H 1.08995 * 109.47382 * 304.38825 * 9 8 6 29 29 H 1.09001 * 109.46789 * 64.39266 * 9 8 6 30 30 H 0.97003 * 119.99370 * 179.97438 * 14 13 11 31 31 H 1.09001 * 117.49485 * 0.02562 * 19 10 9 32 32 H 1.08999 * 117.49846 * 145.01407 * 19 10 9 33 33 H 1.08994 * 117.49644 * 214.98091 * 20 10 9 34 34 H 1.08999 * 117.50012 * 359.97307 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3032 -0.0060 5 6 3.9005 2.5968 -0.0005 6 6 5.3048 3.0352 -0.0006 7 8 6.1990 2.2119 0.0446 8 7 5.6006 4.3494 -0.0452 9 6 6.9958 4.7830 -0.1524 10 6 7.0629 6.3095 -0.0739 11 6 6.6331 6.9124 1.2387 12 1 5.6102 7.2298 1.3779 13 6 7.5457 7.0587 2.2618 14 7 7.1664 7.5684 3.4133 15 14 9.3208 6.5328 2.0124 16 1 10.0780 7.6360 1.3683 17 1 9.9323 6.2147 3.3278 18 1 9.3631 5.3298 1.1429 19 6 6.7520 7.0968 -1.3484 20 6 8.1915 7.0072 -0.8359 21 16 2.4470 3.6110 -0.0010 22 7 1.3521 2.3149 -0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 4.0643 0.4374 -0.0114 27 1 4.8896 5.0081 -0.0063 28 1 7.5742 4.3514 0.6645 29 1 7.4077 4.4497 -1.1050 30 1 7.8084 7.6709 4.1332 31 1 6.4991 6.5272 -2.2427 32 1 6.2367 8.0509 -1.2375 33 1 8.6228 7.9023 -0.3879 34 1 8.8864 6.3786 -1.3927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598697921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:48 Heat of formation + Delta-G solvation = 2.279268 kcal Electronic energy + Delta-G solvation = -19268.653368 eV Core-core repulsion = 16102.171677 eV Total energy + Delta-G solvation = -3166.481691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31483 -39.33385 -37.22550 -36.45323 -33.71884 -32.18346 -31.38928 -28.36838 -27.12739 -25.58975 -24.16461 -21.89148 -21.45668 -19.98675 -19.22900 -18.47838 -17.78428 -16.72666 -16.39401 -15.99421 -15.45189 -15.20805 -14.86953 -14.68759 -14.04246 -13.56248 -13.51373 -13.17839 -12.87662 -12.57472 -12.26902 -12.16495 -11.51963 -11.28742 -11.21784 -10.92261 -10.85234 -10.54312 -10.27710 -10.01310 -9.78234 -9.68444 -9.28205 -8.76289 -8.64309 -8.53836 -8.46931 -6.20258 -4.26014 0.10536 1.10406 1.46209 2.15325 2.82040 3.22572 3.25664 3.36091 3.38128 3.48299 4.35323 4.54964 4.78716 4.92092 5.01374 5.02231 5.09036 5.18831 5.32627 5.56091 5.62936 5.92728 5.94949 5.97884 6.08796 6.34809 6.37078 6.62905 6.78822 6.85081 6.93156 7.00697 7.60871 7.80828 8.33479 8.37723 8.79503 9.42161 10.90891 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.004136 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.111449 B = 6767.972677 C = 6803.616651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.296 6.296 3 C 0.304 3.696 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.583 3.417 7 O -0.528 6.528 8 N -0.687 5.687 9 C 0.154 3.846 10 C -0.019 4.019 11 C -0.494 4.494 12 H 0.079 0.921 13 C 0.081 3.919 14 N -0.892 5.892 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.259 1.259 19 C -0.178 4.178 20 C -0.192 4.192 21 S 0.299 5.701 22 N -0.517 5.517 23 H 0.101 0.899 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.177 0.823 27 H 0.405 0.595 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -10.074 -8.402 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.202 6.202 3 C 0.091 3.909 4 C -0.176 4.176 5 C -0.300 4.300 6 C 0.366 3.634 7 O -0.407 6.407 8 N -0.336 5.336 9 C 0.031 3.969 10 C -0.021 4.021 11 C -0.531 4.531 12 H 0.097 0.903 13 C -0.122 4.122 14 N -0.529 5.529 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.221 1.221 18 H -0.184 1.184 19 C -0.215 4.215 20 C -0.230 4.230 21 S 0.449 5.551 22 N -0.359 5.359 23 H 0.119 0.881 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.194 0.806 27 H 0.240 0.760 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.417 -9.241 -8.186 16.153 hybrid contribution 1.365 -1.241 0.101 1.848 sum -9.052 -10.483 -8.085 16.037 Atomic orbital electron populations 1.22966 0.76838 1.03480 1.02592 1.86302 1.22898 1.22672 1.88349 1.19889 0.89780 0.85229 0.96028 1.20717 0.92252 0.98603 1.06049 1.26185 0.99722 0.97576 1.06515 1.16688 0.85005 0.83496 0.78231 1.90819 1.46622 1.52862 1.50348 1.45739 1.11098 1.05293 1.71450 1.21324 0.79940 0.95487 1.00169 1.19625 0.99901 0.89022 0.93512 1.20175 0.98251 1.41054 0.93638 0.90255 1.24973 0.98852 0.93730 0.94678 1.69879 1.35434 1.43893 1.03660 0.86868 0.85050 0.80077 0.77242 1.20161 1.22067 1.18354 1.22872 0.98511 1.02594 0.97568 1.22975 0.91450 1.03451 1.05075 1.85170 0.89889 1.11464 1.68615 1.76388 1.27059 1.01212 1.31244 0.88106 0.92087 0.92165 0.80595 0.76003 0.90813 0.93217 0.92373 0.90767 0.89209 0.88943 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.43 101.05 1.05 1.36 16 2 O -0.30 -3.48 10.51 -19.62 -0.21 -3.69 16 3 C 0.30 4.03 7.36 -18.42 -0.14 3.90 16 4 C -0.14 -1.90 10.10 -39.90 -0.40 -2.30 16 5 C -0.17 -2.50 6.74 -36.06 -0.24 -2.74 16 6 C 0.58 10.35 7.80 -12.66 -0.10 10.25 16 7 O -0.53 -10.85 16.94 5.24 0.09 -10.76 16 8 N -0.69 -12.35 5.45 -61.48 -0.34 -12.69 16 9 C 0.15 3.07 5.23 -4.04 -0.02 3.04 16 10 C -0.02 -0.41 0.85 -155.65 -0.13 -0.54 16 11 C -0.49 -12.57 9.29 -34.44 -0.32 -12.89 16 12 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 15 Si 0.88 20.87 24.76 -169.99 -4.21 16.66 16 16 H -0.28 -6.36 7.01 56.52 0.40 -5.96 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.26 -5.88 5.98 56.52 0.34 -5.54 16 19 C -0.18 -3.21 9.96 -26.69 -0.27 -3.48 16 20 C -0.19 -3.73 7.59 -26.69 -0.20 -3.94 16 21 S 0.30 3.97 23.28 -107.50 -2.50 1.47 16 22 N -0.52 -7.04 11.03 29.19 0.32 -6.72 16 23 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.18 2.21 8.06 -52.49 -0.42 1.78 16 27 H 0.40 6.75 7.81 -40.82 -0.32 6.44 16 28 H 0.07 1.64 6.74 -51.93 -0.35 1.29 16 29 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.09 1.91 7.07 -51.93 -0.37 1.54 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -29.87 309.80 -6.31 -36.18 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.04 Total: 5.25 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.86 Total: -5.23 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.76 Total: -44.53 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.12 Total: -14.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.21 Total: 16.66 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.50 Total: 1.47 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.87 -6.31 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.455 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds