Wall clock time and date at job start Tue Mar 31 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35963 * 116.99740 * 2 1 4 4 C 1.37569 * 120.82206 * 180.29306 * 3 2 1 5 5 C 1.38036 * 114.24729 * 180.21416 * 4 3 2 6 6 C 1.47115 * 127.76073 * 179.79965 * 5 4 3 7 7 O 1.21638 * 120.00269 * 357.24942 * 6 5 4 8 8 N 1.34776 * 120.00131 * 177.51845 * 6 5 4 9 9 C 1.46502 * 119.99945 * 184.84340 * 8 6 5 10 10 C 1.53003 * 109.46990 * 184.38763 * 9 8 6 11 11 C 1.50701 * 115.55122 * 64.91081 * 10 9 8 12 12 H 1.08001 * 119.99603 * 266.87131 * 11 10 9 13 13 C 1.37878 * 119.99937 * 86.86562 * 11 10 9 14 14 N 1.31512 * 119.99496 * 180.90342 * 13 11 10 15 15 Si 1.86803 * 120.00062 * 0.90426 * 13 11 10 16 16 H 1.48501 * 109.47037 * 84.92510 * 15 13 11 17 17 H 1.48500 * 109.47002 * 204.92530 * 15 13 11 18 18 H 1.48498 * 109.47013 * 324.92630 * 15 13 11 19 19 C 1.53004 * 117.50064 * 279.23762 * 10 9 8 20 20 C 1.53004 * 117.49896 * 210.58099 * 10 9 8 21 21 S 1.77235 * 104.48253 * 359.54598 * 5 4 3 22 22 N 1.30356 * 120.82968 * 359.97351 * 3 2 1 23 23 H 1.09006 * 109.47147 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47402 * 300.00332 * 1 2 3 25 25 H 1.08996 * 109.47229 * 60.00446 * 1 2 3 26 26 H 1.07999 * 122.88026 * 0.02562 * 4 3 2 27 27 H 0.96998 * 120.00114 * 4.84792 * 8 6 5 28 28 H 1.08995 * 109.47382 * 304.38825 * 9 8 6 29 29 H 1.09001 * 109.46789 * 64.39266 * 9 8 6 30 30 H 0.97003 * 119.99370 * 179.97438 * 14 13 11 31 31 H 1.09001 * 117.49485 * 0.02562 * 19 10 9 32 32 H 1.08999 * 117.49846 * 145.01407 * 19 10 9 33 33 H 1.08994 * 117.49644 * 214.98091 * 20 10 9 34 34 H 1.08999 * 117.50012 * 359.97307 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3032 -0.0060 5 6 3.9005 2.5968 -0.0005 6 6 5.3048 3.0352 -0.0006 7 8 6.1990 2.2119 0.0446 8 7 5.6006 4.3494 -0.0452 9 6 6.9958 4.7830 -0.1524 10 6 7.0629 6.3095 -0.0739 11 6 6.6331 6.9124 1.2387 12 1 5.6102 7.2298 1.3779 13 6 7.5457 7.0587 2.2618 14 7 7.1664 7.5684 3.4133 15 14 9.3208 6.5328 2.0124 16 1 10.0780 7.6360 1.3683 17 1 9.9323 6.2147 3.3278 18 1 9.3631 5.3298 1.1429 19 6 6.7520 7.0968 -1.3484 20 6 8.1915 7.0072 -0.8359 21 16 2.4470 3.6110 -0.0010 22 7 1.3521 2.3149 -0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 4.0643 0.4374 -0.0114 27 1 4.8896 5.0081 -0.0063 28 1 7.5742 4.3514 0.6645 29 1 7.4077 4.4497 -1.1050 30 1 7.8084 7.6709 4.1332 31 1 6.4991 6.5272 -2.2427 32 1 6.2367 8.0509 -1.2375 33 1 8.6228 7.9023 -0.3879 34 1 8.8864 6.3786 -1.3927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598697921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:48 Heat of formation + Delta-G solvation = -20.496013 kcal Electronic energy + Delta-G solvation = -19269.640978 eV Core-core repulsion = 16102.171677 eV Total energy + Delta-G solvation = -3167.469302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.36163 -40.70183 -38.77754 -37.49021 -35.21890 -34.20134 -32.52671 -29.35235 -28.48321 -27.38827 -25.37568 -23.36242 -22.66528 -21.39906 -20.74807 -19.71965 -18.85358 -18.37945 -17.32419 -17.31052 -16.97877 -16.84303 -16.27006 -15.79169 -15.48515 -14.88199 -14.71689 -14.58170 -14.43578 -14.24313 -13.78752 -13.08824 -12.99645 -12.64272 -12.56175 -12.15019 -12.13315 -11.98610 -11.96582 -11.62201 -11.38530 -10.98160 -10.92568 -10.65058 -10.37880 -10.04375 -9.50541 -8.27891 -6.34991 -1.03505 0.01252 0.40664 1.06360 1.37040 1.42673 1.50905 1.71854 1.89521 2.29950 2.38505 3.07112 3.22425 3.47319 3.79998 4.01073 4.10459 4.31041 4.36311 4.37343 4.42567 4.50869 4.54543 4.72344 4.79786 4.91050 4.96551 5.12738 5.27689 5.35988 5.53069 5.70755 5.93061 6.29713 6.39351 6.74411 6.95801 7.36157 8.86608 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.004136 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.111449 B = 6767.972677 C = 6803.616651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.303 3.697 4 C -0.127 4.127 5 C -0.189 4.189 6 C 0.588 3.412 7 O -0.560 6.560 8 N -0.688 5.688 9 C 0.161 3.839 10 C -0.045 4.045 11 C -0.481 4.481 12 H 0.046 0.954 13 C 0.026 3.974 14 N -0.944 5.944 15 Si 0.929 3.071 16 H -0.262 1.262 17 H -0.306 1.306 18 H -0.241 1.241 19 C -0.151 4.151 20 C -0.191 4.191 21 S 0.320 5.680 22 N -0.521 5.521 23 H 0.133 0.867 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.186 0.814 27 H 0.410 0.590 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 -11.215 -10.480 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.207 6.207 3 C 0.090 3.910 4 C -0.166 4.166 5 C -0.320 4.320 6 C 0.372 3.628 7 O -0.440 6.440 8 N -0.337 5.337 9 C 0.037 3.963 10 C -0.047 4.047 11 C -0.519 4.519 12 H 0.064 0.936 13 C -0.172 4.172 14 N -0.584 5.584 15 Si 0.755 3.245 16 H -0.187 1.187 17 H -0.234 1.234 18 H -0.164 1.164 19 C -0.188 4.188 20 C -0.228 4.228 21 S 0.470 5.530 22 N -0.364 5.364 23 H 0.151 0.849 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.203 0.797 27 H 0.246 0.754 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.717 -10.376 -10.299 18.127 hybrid contribution 1.265 -0.910 0.727 1.719 sum -9.452 -11.286 -9.572 17.560 Atomic orbital electron populations 1.23260 0.75001 1.05648 1.02551 1.86315 1.24693 1.21720 1.87994 1.19894 0.89703 0.85700 0.95713 1.20870 0.92704 0.98486 1.04499 1.25829 0.98866 0.98619 1.08723 1.16895 0.85847 0.82931 0.77109 1.90795 1.47956 1.53483 1.51785 1.45706 1.10669 1.05715 1.71568 1.21108 0.80692 0.94223 1.00241 1.19463 1.02744 0.89747 0.92706 1.20377 0.96588 1.39327 0.95569 0.93600 1.25727 1.02743 0.94265 0.94493 1.70020 1.36667 1.46835 1.04854 0.86055 0.80777 0.80746 0.76920 1.18735 1.23353 1.16433 1.22919 0.97215 1.01937 0.96763 1.23044 0.92342 1.02872 1.04568 1.85092 0.88754 1.10919 1.68206 1.76381 1.27225 1.01498 1.31272 0.84937 0.92289 0.91982 0.79693 0.75395 0.93555 0.90930 0.92723 0.87438 0.89549 0.90332 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.43 113.37 1.18 1.62 16 2 O -0.30 -6.47 10.51 -93.13 -0.98 -7.45 16 3 C 0.30 7.52 7.36 84.75 0.62 8.15 16 4 C -0.13 -3.31 10.10 22.06 0.22 -3.09 16 5 C -0.19 -5.42 6.74 24.55 0.17 -5.25 16 6 C 0.59 20.39 7.80 86.57 0.68 21.07 16 7 O -0.56 -22.64 16.94 -4.15 -0.07 -22.71 16 8 N -0.69 -24.04 5.45 -466.67 -2.54 -26.58 16 9 C 0.16 6.14 5.23 86.38 0.45 6.59 16 10 C -0.05 -1.83 0.85 -52.92 -0.04 -1.88 16 11 C -0.48 -24.71 9.29 25.60 0.24 -24.47 16 12 H 0.05 2.60 8.06 -2.91 -0.02 2.57 16 13 C 0.03 1.42 5.47 84.66 0.46 1.89 16 14 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 15 Si 0.93 42.91 24.76 68.60 1.70 44.61 16 16 H -0.26 -11.44 7.01 99.48 0.70 -10.74 16 17 H -0.31 -14.62 7.11 99.48 0.71 -13.92 16 18 H -0.24 -10.33 5.98 99.48 0.60 -9.73 16 19 C -0.15 -4.99 9.96 30.62 0.30 -4.68 16 20 C -0.19 -6.85 7.59 30.62 0.23 -6.61 16 21 S 0.32 8.10 23.28 -56.49 -1.32 6.79 16 22 N -0.52 -13.33 11.03 -175.22 -1.93 -15.26 16 23 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 25 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 26 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.41 13.36 7.81 -92.71 -0.72 12.64 16 28 H 0.05 2.02 6.74 -2.39 -0.02 2.00 16 29 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.08 3.06 7.07 -2.39 -0.02 3.04 16 34 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -64.92 309.80 -0.04 -64.96 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.29 Total: 18.69 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 4.51 Total: -6.68 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.18 Total: -98.21 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.05 Total: -30.16 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.70 Total: 44.61 kcal Atomic # 16 Polarization: 8.10 SS G_CDS: -1.32 Total: 6.79 kcal Total: -64.92 -0.04 -64.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.460 kcal (2) G-P(sol) polarization free energy of solvation -64.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds