Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00136 * 2 1 4 4 C 1.50700 * 109.47038 * 270.00053 * 3 2 1 5 5 H 1.08003 * 120.00183 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00089 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00162 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47095 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47003 * 120.00192 * 8 6 4 11 11 H 1.48500 * 109.47395 * 240.00264 * 8 6 4 12 12 C 1.34773 * 119.99966 * 179.97438 * 2 1 3 13 13 O 1.21569 * 120.00266 * 179.97438 * 12 2 1 14 14 C 1.47688 * 120.00152 * 0.02562 * 12 2 1 15 15 C 1.39864 * 120.16847 * 90.22191 * 14 12 2 16 16 F 1.35097 * 120.10968 * 359.97438 * 15 14 12 17 17 C 1.38281 * 119.77955 * 180.25643 * 15 14 12 18 18 C 1.38247 * 120.11885 * 359.77171 * 17 15 14 19 19 C 1.38422 * 120.33681 * 0.02562 * 18 17 15 20 20 C 1.37898 * 120.21883 * 359.97398 * 19 18 17 21 21 N 1.48020 * 120.06033 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99894 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99903 * 179.72735 * 21 20 19 24 24 H 1.08993 * 109.46999 * 270.00404 * 1 2 3 25 25 H 1.09005 * 109.46942 * 30.00326 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99883 * 1 2 3 27 27 H 1.09005 * 109.47105 * 29.99931 * 3 2 1 28 28 H 1.08998 * 109.47143 * 149.99963 * 3 2 1 29 29 H 0.96996 * 120.00406 * 179.97438 * 7 6 4 30 30 H 1.08001 * 119.93971 * 179.75201 * 17 15 14 31 31 H 1.07997 * 119.83030 * 179.97438 * 18 17 15 32 32 H 1.08003 * 119.88665 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4168 -3.4340 9 1 2.8609 2.4163 -4.3674 10 1 2.8000 4.7373 -3.6679 11 1 4.9006 3.5257 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3546 -1.1672 0.0001 14 6 1.4004 -2.4462 0.0005 15 6 1.0535 -3.0575 -1.2087 16 9 1.3924 -2.4797 -2.3819 17 6 0.3575 -4.2524 -1.1993 18 6 0.0097 -4.8432 0.0012 19 6 0.3542 -4.2446 1.2008 20 6 1.0483 -3.0530 1.2077 21 7 1.4154 -2.4162 2.4925 22 8 1.1040 -2.9445 3.5449 23 8 2.0328 -1.3663 2.4973 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0302 4.4440 -0.8504 30 1 0.0848 -4.7246 -2.1315 31 1 -0.5343 -5.7762 0.0030 32 1 0.0792 -4.7127 2.1344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601013814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -41.275780 kcal Electronic energy + Delta-G solvation = -22530.912638 eV Core-core repulsion = 18796.329082 eV Total energy + Delta-G solvation = -3734.583556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.26576 -42.21418 -39.85448 -38.38867 -36.44853 -34.94923 -32.78558 -32.25164 -31.36982 -27.94955 -26.91129 -25.98804 -24.29025 -22.81653 -22.49304 -19.96999 -19.02644 -18.61114 -17.54278 -17.13191 -16.90172 -16.66876 -16.43672 -16.13444 -15.54454 -15.31914 -14.41455 -14.22906 -13.84625 -13.16556 -13.00505 -12.83492 -12.43014 -12.39643 -12.17826 -11.97716 -11.47884 -11.23569 -11.07088 -11.00899 -10.87991 -10.61385 -10.19942 -10.00129 -9.65260 -9.48553 -9.22097 -8.42697 -7.75896 -6.03391 -4.08572 -0.42811 0.33965 1.15748 1.26447 2.73419 2.97938 3.30599 3.37907 3.39741 3.44509 3.64381 4.03844 4.34349 4.35274 4.41870 4.48630 4.73479 5.15367 5.22825 5.30372 5.31744 5.43308 5.43910 5.77705 5.92420 6.06087 6.32745 6.95987 7.41829 7.47797 7.65020 7.91755 8.20424 8.22918 8.72242 8.96904 9.55929 11.04803 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.006006 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.732430 B = 4660.605649 C = 5509.895182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.577 5.577 3 C 0.248 3.752 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.553 3.447 13 O -0.509 6.509 14 C -0.083 4.083 15 C 0.133 3.867 16 F -0.107 7.107 17 C -0.106 4.106 18 C -0.084 4.084 19 C -0.069 4.069 20 C 0.003 3.997 21 N 0.020 4.980 22 O -0.159 6.159 23 O -0.116 6.116 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 -17.633 0.965 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.308 5.308 3 C 0.130 3.870 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.336 3.664 13 O -0.385 6.385 14 C -0.088 4.088 15 C 0.112 3.888 16 F -0.085 7.085 17 C -0.125 4.125 18 C -0.103 4.103 19 C -0.088 4.088 20 C -0.080 4.080 21 N 0.543 4.457 22 O -0.372 6.372 23 O -0.338 6.338 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.211 -17.708 0.358 20.962 hybrid contribution 0.260 0.592 -0.886 1.097 sum -10.951 -17.116 -0.528 20.326 Atomic orbital electron populations 1.21670 0.81531 1.02597 1.00498 1.48002 1.06003 1.07222 1.69535 1.19419 0.92899 0.77014 0.97663 1.21459 1.36842 1.06417 0.92133 0.92350 1.24925 0.95284 0.96324 0.97458 1.69949 1.38163 1.14287 1.30633 0.86442 0.78140 0.78290 0.84550 1.19818 1.20925 1.20802 1.17411 0.87340 0.82431 0.79266 1.90831 1.12163 1.85771 1.49709 1.20370 0.98006 0.99312 0.91149 1.17384 0.98178 0.92718 0.80515 1.91667 1.89801 1.83663 1.43363 1.21587 0.96555 0.93232 1.01129 1.21113 0.98972 1.00461 0.89752 1.21073 0.94492 0.91874 1.01383 1.20874 1.06642 0.97284 0.83195 1.43472 0.99254 1.00869 1.02119 1.94495 1.57695 1.65699 1.19328 1.94748 1.36535 1.08968 1.93546 0.93674 0.89645 0.93446 0.94374 0.93077 0.92684 0.82267 0.82254 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 10.26 59.85 0.61 2.01 16 2 N -0.58 -12.98 2.75 -184.14 -0.51 -13.49 16 3 C 0.25 6.69 5.16 -5.19 -0.03 6.67 16 4 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 C 0.55 12.42 4.16 -12.40 -0.05 12.37 16 13 O -0.51 -13.68 16.56 -3.63 -0.06 -13.74 16 14 C -0.08 -1.39 3.92 -104.91 -0.41 -1.80 16 15 C 0.13 1.83 6.87 -38.96 -0.27 1.56 16 16 F -0.11 -1.73 16.83 2.25 0.04 -1.69 16 17 C -0.11 -0.88 10.01 -39.56 -0.40 -1.27 16 18 C -0.08 -0.54 10.04 -39.51 -0.40 -0.94 16 19 C -0.07 -0.64 9.54 -39.64 -0.38 -1.02 16 20 C 0.00 0.05 6.88 -79.55 -0.55 -0.50 16 21 N 0.02 0.35 4.45 34.15 0.15 0.50 16 22 O -0.16 -2.53 18.45 -29.46 -0.54 -3.07 16 23 O -0.12 -2.43 16.27 -33.30 -0.54 -2.97 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 26 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 27 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 28 H 0.05 1.55 7.42 -51.93 -0.39 1.17 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 32 H 0.16 1.12 7.60 -52.48 -0.40 0.72 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -35.75 299.24 -6.29 -42.05 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: -2.78 Total: -6.29 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.28 Total: 3.21 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.38 Total: -39.03 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.15 Total: -19.79 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.75 -6.29 -42.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.771 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds