Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21563 * 119.99920 * 359.97438 * 13 12 2 15 15 C 1.47693 * 120.00138 * 179.97438 * 13 12 2 16 16 C 1.39862 * 120.16700 * 270.00149 * 15 13 12 17 17 F 1.35099 * 120.10958 * 359.97438 * 16 15 13 18 18 C 1.38280 * 119.78350 * 179.97438 * 16 15 13 19 19 C 1.38251 * 120.11388 * 0.02562 * 18 16 15 20 20 C 1.38419 * 120.33942 * 359.97438 * 19 18 16 21 21 C 1.37899 * 120.21756 * 359.74211 * 20 19 18 22 22 N 1.48013 * 120.05853 * 180.27901 * 21 20 19 23 23 O 1.21798 * 120.00396 * 0.25488 * 22 21 20 24 24 O 1.21806 * 120.00115 * 180.25262 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 30 30 H 1.07997 * 119.94644 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.82871 * 180.02562 * 19 18 16 32 32 H 1.07999 * 119.88786 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1614 2.4116 15 6 2.6388 -0.7145 3.5632 16 6 1.7369 -1.3375 4.4319 17 9 0.4118 -1.3043 4.1712 18 6 2.2061 -1.9877 5.5586 19 6 3.5621 -2.0213 5.8258 20 6 4.4590 -1.4064 4.9694 21 6 4.0068 -0.7591 3.8388 22 7 4.9694 -0.1080 2.9223 23 8 6.1626 -0.1475 3.1638 24 8 4.5685 0.4674 1.9264 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 2.2490 -1.6317 1.1527 30 1 1.5120 -2.4693 6.2314 31 1 3.9236 -2.5308 6.7068 32 1 5.5168 -1.4375 5.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -51.612850 kcal Electronic energy + Delta-G solvation = -22264.398716 eV Core-core repulsion = 18529.366911 eV Total energy + Delta-G solvation = -3735.031805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.34332 -42.15043 -39.78428 -38.40543 -36.38922 -34.85703 -32.67664 -32.18528 -31.40589 -28.84557 -26.83091 -25.23824 -24.29174 -22.77725 -21.47791 -19.95038 -19.33614 -18.59335 -18.03364 -17.44111 -16.90725 -16.70344 -16.15219 -16.10130 -15.47528 -15.22658 -14.40701 -14.11657 -13.70391 -13.27382 -13.04212 -12.68736 -12.55017 -12.38696 -11.70562 -11.42199 -11.11626 -11.04539 -10.93871 -10.89961 -10.75709 -10.35400 -10.21299 -10.01044 -9.52162 -9.34149 -9.03907 -8.53024 -8.00789 -6.08001 -4.16765 -0.41991 0.31408 1.18800 1.29276 2.72305 2.94572 3.30088 3.34700 3.35530 3.42398 3.63886 4.03876 4.32493 4.36333 4.39677 4.51124 4.95653 5.15925 5.24840 5.26892 5.35808 5.42267 5.90634 6.37613 6.82428 6.93472 7.13648 7.35942 7.49199 7.68977 7.69836 7.91865 8.15317 8.51396 8.71652 8.94881 9.49164 10.98264 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.005678 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.661453 B = 4930.235477 C = 5661.884036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.056 0.944 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.550 3.450 14 O -0.523 6.523 15 C -0.090 4.090 16 C 0.134 3.866 17 F -0.110 7.110 18 C -0.107 4.107 19 C -0.083 4.083 20 C -0.069 4.069 21 C 0.007 3.993 22 N 0.017 4.983 23 O -0.161 6.161 24 O -0.105 6.105 25 H 0.027 0.973 26 H 0.093 0.907 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -8.837 17.649 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.167 3.833 3 H 0.074 0.926 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.329 5.329 13 C 0.331 3.669 14 O -0.400 6.400 15 C -0.096 4.096 16 C 0.113 3.887 17 F -0.088 7.088 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.088 4.088 21 C -0.076 4.076 22 N 0.540 4.460 23 O -0.373 6.373 24 O -0.329 6.329 25 H 0.046 0.954 26 H 0.112 0.888 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.219 0.781 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.126 -8.174 17.938 19.959 hybrid contribution 0.416 -0.765 -1.061 1.372 sum 3.541 -8.940 16.877 19.424 Atomic orbital electron populations 1.22108 0.98250 0.99216 1.01094 1.18866 0.90905 0.94381 0.79153 0.92575 1.21104 1.32474 1.13228 0.90145 0.92189 1.24850 0.94771 0.94944 0.98954 1.69881 1.35796 1.22389 1.24009 0.86496 0.79314 0.79442 0.81776 1.20284 1.21099 1.20049 1.46454 1.63486 1.13265 1.09735 1.17515 0.79739 0.87014 0.82657 1.90815 1.50846 1.14329 1.84034 1.20382 0.91467 0.98370 0.99386 1.17351 0.78215 0.98492 0.94609 1.91640 1.29339 1.94230 1.93610 1.21572 0.97458 0.97965 0.95593 1.21128 0.91356 0.98085 0.99559 1.21094 1.02986 0.93935 0.90818 1.20921 0.87874 1.04094 0.94756 1.43491 1.01425 0.99803 1.01291 1.94496 0.98507 1.64904 1.79426 1.94793 1.82955 1.40277 1.14851 0.95414 0.88818 0.96620 0.92490 0.78066 0.82287 0.82257 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.27 7.00 2.56 -69.09 -0.18 6.82 16 3 H 0.06 1.69 7.58 -51.93 -0.39 1.30 16 4 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.88 -25.19 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.68 -15.04 4.94 -55.93 -0.28 -15.32 16 13 C 0.55 11.76 4.27 -12.40 -0.05 11.71 16 14 O -0.52 -13.25 16.66 -2.98 -0.05 -13.30 16 15 C -0.09 -1.46 5.64 -104.91 -0.59 -2.05 16 16 C 0.13 1.72 7.29 -38.96 -0.28 1.43 16 17 F -0.11 -1.60 16.83 2.25 0.04 -1.56 16 18 C -0.11 -0.83 10.01 -39.56 -0.40 -1.23 16 19 C -0.08 -0.52 10.04 -39.51 -0.40 -0.92 16 20 C -0.07 -0.65 9.54 -39.64 -0.38 -1.02 16 21 C 0.01 0.10 6.88 -79.56 -0.55 -0.45 16 22 N 0.02 0.30 4.45 34.15 0.15 0.45 16 23 O -0.16 -2.69 18.45 -29.46 -0.54 -3.23 16 24 O -0.10 -2.28 16.26 -33.16 -0.54 -2.82 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.39 7.53 8.53 -40.82 -0.35 7.18 16 30 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.16 0.34 8.06 -52.48 -0.42 -0.08 16 32 H 0.16 1.16 7.60 -52.49 -0.40 0.76 16 LS Contribution 297.51 15.07 4.48 4.48 Total: -1.00 -33.48 297.51 -6.69 -40.17 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.69 Total: 1.69 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.87 Total: -2.03 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.50 Total: -39.43 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.13 Total: -19.36 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.48 -6.69 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.439 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds