Wall clock time and date at job start Tue Mar 31 2020 05:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30940 * 123.03744 * 2 1 4 4 C 1.29370 * 117.46887 * 179.97438 * 3 2 1 5 5 C 1.50700 * 124.70689 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.79946 * 3.62718 * 5 4 3 7 7 C 1.54809 * 110.90788 * 239.99862 * 5 4 3 8 8 C 1.54098 * 104.18472 * 220.91701 * 7 5 4 9 9 O 1.43737 * 107.29647 * 357.97214 * 8 7 5 10 10 C 1.44372 * 106.97696 * 26.51180 * 9 8 7 11 11 S 1.70927 * 110.59534 * 359.74147 * 4 3 2 12 12 C 1.36775 * 123.04018 * 179.97438 * 2 1 3 13 13 C 1.46566 * 126.18092 * 0.02562 * 12 2 1 14 14 O 1.21727 * 119.99791 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99968 * 179.97438 * 13 12 2 16 16 C 1.36895 * 119.99605 * 179.97438 * 15 13 12 17 17 H 1.07991 * 120.00079 * 0.02562 * 16 15 13 18 18 C 1.39004 * 119.99462 * 180.02562 * 16 15 13 19 19 N 1.31400 * 120.00368 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99631 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47483 * 269.99922 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00437 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00259 * 20 18 16 24 24 H 1.09001 * 109.46754 * 270.03951 * 1 2 3 25 25 H 1.08994 * 109.46993 * 30.04180 * 1 2 3 26 26 H 1.09000 * 109.46729 * 150.04540 * 1 2 3 27 27 H 1.09000 * 110.48730 * 339.59684 * 7 5 4 28 28 H 1.08999 * 110.48751 * 102.24533 * 7 5 4 29 29 H 1.09002 * 109.87801 * 117.39773 * 8 7 5 30 30 H 1.09003 * 109.88078 * 238.54351 * 8 7 5 31 31 H 1.08998 * 110.62072 * 201.44010 * 10 9 8 32 32 H 1.09005 * 110.62002 * 78.43978 * 10 9 8 33 33 H 0.96996 * 119.99887 * 0.02562 * 15 13 12 34 34 H 0.97001 * 119.99629 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2209 1.0977 0.0000 4 6 3.5085 0.9722 0.0005 5 6 4.4828 2.1219 0.0000 6 1 3.9571 3.0747 0.0637 7 6 5.3920 2.0751 -1.2520 8 6 6.7881 2.4513 -0.7191 9 8 6.6491 2.7299 0.6841 10 6 5.5093 1.9777 1.1524 11 16 3.9517 -0.6787 0.0083 12 6 2.2528 -1.1466 0.0005 13 6 1.7328 -2.5169 0.0006 14 8 0.5313 -2.7119 -0.0003 15 7 2.5851 -3.5610 0.0006 16 6 2.0993 -4.8409 0.0012 17 1 1.0334 -5.0139 0.0013 18 6 2.9783 -5.9178 0.0018 19 7 4.2753 -5.7072 0.0022 20 14 2.3156 -7.6642 0.0019 21 1 2.1394 -8.1268 1.4020 22 1 1.0066 -7.6970 -0.6987 23 1 3.2739 -8.5574 -0.6976 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3633 -0.8904 -0.5131 27 1 5.4037 1.0717 -1.6777 28 1 5.0583 2.8012 -1.9933 29 1 7.4772 1.6194 -0.8654 30 1 7.1569 3.3361 -1.2380 31 1 5.1163 2.4095 2.0728 32 1 5.7749 0.9310 1.3010 33 1 3.5425 -3.4056 0.0009 34 1 4.6194 -4.8003 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:50 Heat of formation + Delta-G solvation = -47.057843 kcal Electronic energy + Delta-G solvation = -19485.619961 eV Core-core repulsion = 16316.998852 eV Total energy + Delta-G solvation = -3168.621109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07305 -39.30085 -38.07854 -34.66332 -33.44222 -31.44446 -30.82999 -29.38492 -27.98912 -24.91719 -24.48149 -22.78029 -21.38703 -21.05754 -19.12865 -18.24313 -17.69295 -16.79203 -16.28786 -15.80670 -15.29239 -14.85953 -14.73047 -14.03257 -13.85260 -13.77921 -13.43075 -13.30684 -12.97231 -12.51645 -12.33475 -11.94041 -11.70605 -11.53771 -11.43061 -11.18822 -11.14304 -10.85984 -10.34605 -10.14246 -9.99494 -9.83756 -9.60050 -9.13845 -8.70307 -8.40760 -8.29149 -7.08926 -4.10495 0.54607 1.46481 1.90752 2.77524 3.21321 3.23674 3.41707 3.57120 3.99766 4.00615 4.06982 4.31366 4.56822 4.62292 4.71155 4.94927 5.00069 5.05362 5.21602 5.42695 5.46400 5.49985 5.52051 5.66530 5.78431 5.80706 6.05145 6.16725 6.22510 6.53625 6.76215 7.48484 7.76800 7.92702 8.24678 8.47493 9.11587 9.57403 10.32804 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.004714 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.824558 B = 5938.401728 C = 6985.825926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.097 3.903 3 N -0.460 5.460 4 C 0.027 3.973 5 C -0.040 4.040 6 H 0.114 0.886 7 C -0.152 4.152 8 C 0.047 3.953 9 O -0.373 6.373 10 C 0.054 3.946 11 S 0.132 5.868 12 C -0.233 4.233 13 C 0.498 3.502 14 O -0.574 6.574 15 N -0.548 5.548 16 C -0.366 4.366 17 H 0.110 0.890 18 C -0.007 4.007 19 N -0.875 5.875 20 Si 1.097 2.903 21 H -0.280 1.280 22 H -0.279 1.279 23 H -0.277 1.277 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.376 0.624 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 12.881 -1.057 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 N -0.174 5.174 4 C -0.249 4.249 5 C -0.063 4.063 6 H 0.132 0.868 7 C -0.191 4.191 8 C -0.030 4.030 9 O -0.291 6.291 10 C -0.024 4.024 11 S 0.388 5.612 12 C -0.357 4.357 13 C 0.285 3.715 14 O -0.461 6.461 15 N -0.183 5.183 16 C -0.496 4.496 17 H 0.128 0.872 18 C -0.212 4.212 19 N -0.512 5.512 20 Si 0.921 3.079 21 H -0.206 1.206 22 H -0.205 1.205 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.209 0.791 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.999 11.241 -0.932 12.337 hybrid contribution -0.830 1.688 -0.153 1.887 sum 4.169 12.928 -1.085 13.627 Atomic orbital electron populations 1.20488 0.86227 1.03802 1.03033 1.20704 0.98267 0.84620 1.00384 1.65830 1.04186 1.32000 1.15412 1.26500 0.93889 0.97362 1.07125 1.21264 0.93172 0.95723 0.96101 0.86783 1.23144 0.94394 1.03855 0.97664 1.23203 0.96275 1.01394 0.82140 1.88887 1.48786 1.68486 1.22968 1.23726 0.84469 0.97133 0.97043 1.83754 1.07575 1.02053 1.67838 1.26269 0.94300 1.00381 1.14790 1.16149 0.86702 0.81501 0.87108 1.90624 1.13903 1.83689 1.57886 1.42026 1.07654 1.06363 1.62257 1.20831 0.97111 0.81730 1.49969 0.87189 1.26830 0.93777 1.05792 0.94786 1.70870 1.12609 1.24017 1.43694 0.83053 0.75316 0.71952 0.77580 1.20636 1.20459 1.20253 0.91018 0.91801 0.88072 0.89964 0.89422 0.91808 0.89403 0.87938 0.91468 0.79058 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.72 36.01 0.35 -1.00 16 2 C 0.10 1.87 6.83 -83.50 -0.57 1.30 16 3 N -0.46 -8.05 10.49 -7.47 -0.08 -8.13 16 4 C 0.03 0.41 6.17 -13.31 -0.08 0.33 16 5 C -0.04 -0.47 3.62 -89.76 -0.32 -0.79 16 6 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.15 -1.49 6.57 -25.20 -0.17 -1.65 16 8 C 0.05 0.43 7.70 37.73 0.29 0.72 16 9 O -0.37 -4.30 11.52 -35.23 -0.41 -4.71 16 10 C 0.05 0.60 7.15 38.21 0.27 0.87 16 11 S 0.13 2.15 20.89 -107.50 -2.25 -0.09 16 12 C -0.23 -4.80 6.51 -36.76 -0.24 -5.04 16 13 C 0.50 12.22 7.73 -12.90 -0.10 12.12 16 14 O -0.57 -15.43 13.90 5.16 0.07 -15.35 16 15 N -0.55 -13.80 5.27 -12.20 -0.06 -13.86 16 16 C -0.37 -9.87 9.68 -15.01 -0.15 -10.01 16 17 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 18 C -0.01 -0.17 5.50 -17.45 -0.10 -0.27 16 19 N -0.88 -23.34 13.68 55.50 0.76 -22.58 16 20 Si 1.10 22.76 29.92 -169.99 -5.09 17.67 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.98 6.05 -51.93 -0.31 1.67 16 27 H 0.08 0.85 7.40 -51.93 -0.38 0.47 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 33 H 0.38 8.82 5.91 -40.82 -0.24 8.57 16 34 H 0.27 6.86 6.77 -40.82 -0.28 6.58 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -30.73 301.70 -7.04 -37.77 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.72 Total: 8.16 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.81 Total: -3.42 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.62 Total: -44.56 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.33 Total: -20.06 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.09 Total: 17.67 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.25 Total: -0.09 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.73 -7.04 -37.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.291 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds