Wall clock time and date at job start Tue Mar 31 2020 05:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30949 * 123.03527 * 2 1 4 4 C 1.29371 * 117.46508 * 180.02562 * 3 2 1 5 5 C 1.50704 * 124.70033 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.45794 * 357.39958 * 5 4 3 7 7 C 1.54507 * 110.50985 * 120.00430 * 5 4 3 8 8 C 1.54481 * 104.06346 * 118.64537 * 7 5 4 9 9 O 1.44421 * 104.80006 * 23.97946 * 8 7 5 10 10 C 1.44417 * 105.27972 * 319.48730 * 9 8 7 11 11 S 1.70923 * 110.59950 * 359.75188 * 4 3 2 12 12 C 1.36779 * 123.04361 * 180.02562 * 2 1 3 13 13 C 1.46557 * 126.18010 * 359.95184 * 12 2 1 14 14 O 1.21733 * 119.99831 * 0.02562 * 13 12 2 15 15 N 1.34777 * 120.00125 * 179.97438 * 13 12 2 16 16 C 1.36891 * 119.99729 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00550 * 0.02562 * 16 15 13 18 18 C 1.39014 * 119.99666 * 180.02562 * 16 15 13 19 19 N 1.31397 * 119.99650 * 180.27683 * 18 16 15 20 20 Si 1.86800 * 119.99858 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 90.00119 * 20 18 16 22 22 H 1.48499 * 109.47026 * 209.99966 * 20 18 16 23 23 H 1.48496 * 109.47474 * 330.00002 * 20 18 16 24 24 H 1.09001 * 109.47042 * 269.97135 * 1 2 3 25 25 H 1.08990 * 109.47653 * 29.97429 * 1 2 3 26 26 H 1.09007 * 109.47172 * 149.98135 * 1 2 3 27 27 H 1.09005 * 110.51233 * 237.29336 * 7 5 4 28 28 H 1.09004 * 110.51411 * 0.02562 * 7 5 4 29 29 H 1.08997 * 110.37093 * 142.80969 * 8 7 5 30 30 H 1.08994 * 110.36999 * 265.14646 * 8 7 5 31 31 H 1.09007 * 110.37277 * 281.68621 * 10 9 8 32 32 H 1.08997 * 110.38117 * 159.34614 * 10 9 8 33 33 H 0.97000 * 119.99736 * 0.02562 * 15 13 12 34 34 H 0.97004 * 119.99640 * 179.72697 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2208 1.0978 0.0000 4 6 3.5084 0.9722 -0.0005 5 6 4.4826 2.1221 0.0000 6 1 3.9504 3.0722 -0.0455 7 6 5.3851 2.0665 1.2528 8 6 6.8119 1.9122 0.6811 9 8 6.7347 2.4553 -0.6549 10 6 5.4709 1.9948 -1.1805 11 16 3.9517 -0.6785 0.0058 12 6 2.2528 -1.1466 -0.0005 13 6 1.7329 -2.5168 -0.0001 14 8 0.5313 -2.7119 0.0002 15 7 2.5851 -3.5609 -0.0012 16 6 2.0995 -4.8408 -0.0014 17 1 1.0334 -5.0139 -0.0011 18 6 2.9785 -5.9177 -0.0020 19 7 2.5123 -7.1462 -0.0077 20 14 4.8224 -5.6183 -0.0033 21 1 5.3119 -5.5390 1.3964 22 1 5.5048 -6.7358 -0.7038 23 1 5.1162 -4.3422 -0.7035 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8899 -0.5142 27 1 5.3009 2.9902 1.8255 28 1 5.1270 1.2071 1.8717 29 1 7.5242 2.4790 1.2806 30 1 7.0953 0.8603 0.6474 31 1 5.5487 0.9555 -1.4998 32 1 5.1530 2.6250 -2.0111 33 1 3.5426 -3.4054 -0.0019 34 1 3.1257 -7.8977 -0.0121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:53 Heat of formation + Delta-G solvation = -39.902602 kcal Electronic energy + Delta-G solvation = -19595.633668 eV Core-core repulsion = 16427.322834 eV Total energy + Delta-G solvation = -3168.310834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13428 -39.32694 -38.08980 -34.34601 -33.45589 -32.00877 -30.82749 -29.37469 -28.19719 -25.04730 -24.48369 -23.03494 -21.12067 -20.85992 -19.46342 -18.23499 -17.73893 -16.59990 -16.11437 -15.80740 -15.38512 -15.09997 -14.85890 -14.18500 -13.73585 -13.48711 -13.37972 -13.17184 -12.97810 -12.57609 -12.44712 -12.27878 -11.91047 -11.69013 -11.49419 -11.39330 -11.17055 -10.98045 -10.79146 -10.24410 -10.12162 -9.87284 -9.64461 -9.19257 -8.76466 -8.49661 -8.37267 -6.63182 -4.03241 0.49955 1.41022 1.85555 2.73347 2.89476 2.93070 2.99246 3.58984 3.86083 3.91427 3.98109 4.31641 4.39949 4.55477 4.68652 4.93912 4.98619 5.03476 5.18193 5.38763 5.43045 5.45771 5.51856 5.64884 5.70471 5.73219 6.04554 6.14391 6.20963 6.44024 6.75289 7.24023 7.80512 7.92484 8.28651 8.63471 9.09233 9.53518 10.47309 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.005779 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.620688 B = 4843.766629 C = 6163.037607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.102 3.898 3 N -0.460 5.460 4 C 0.031 3.969 5 C -0.041 4.041 6 H 0.113 0.887 7 C -0.151 4.151 8 C 0.042 3.958 9 O -0.370 6.370 10 C 0.051 3.949 11 S 0.120 5.880 12 C -0.233 4.233 13 C 0.505 3.495 14 O -0.562 6.562 15 N -0.562 5.562 16 C -0.293 4.293 17 H 0.129 0.871 18 C 0.046 3.954 19 N -0.854 5.854 20 Si 0.872 3.128 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.265 1.265 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.370 0.630 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 16.154 0.917 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.174 5.174 4 C -0.245 4.245 5 C -0.064 4.064 6 H 0.131 0.869 7 C -0.190 4.190 8 C -0.035 4.035 9 O -0.288 6.288 10 C -0.027 4.027 11 S 0.376 5.624 12 C -0.358 4.358 13 C 0.293 3.707 14 O -0.448 6.448 15 N -0.198 5.198 16 C -0.422 4.422 17 H 0.147 0.853 18 C -0.161 4.161 19 N -0.492 5.492 20 Si 0.697 3.303 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.190 1.190 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.204 0.796 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.085 15.866 0.814 18.301 hybrid contribution 0.441 -0.132 0.161 0.488 sum 9.526 15.734 0.975 18.419 Atomic orbital electron populations 1.20512 0.86085 1.03946 1.03160 1.20735 0.98322 0.84566 0.99880 1.65855 1.04139 1.31963 1.15410 1.26637 0.93946 0.97228 1.06692 1.21111 0.93455 0.95630 0.96167 0.86858 1.23146 0.94393 1.04215 0.97211 1.23497 0.96778 0.99432 0.83771 1.89141 1.37418 1.73564 1.28686 1.23616 0.82425 1.00767 0.95887 1.83731 1.07924 1.02493 1.68235 1.26241 0.94051 1.00384 1.15105 1.16081 0.86650 0.81380 0.86624 1.90661 1.13770 1.83575 1.56783 1.42262 1.07130 1.06746 1.63657 1.19613 0.97101 0.78972 1.46534 0.85341 1.25138 0.99120 0.94887 0.96957 1.69604 1.36125 0.98049 1.45377 0.86741 0.84621 0.79249 0.79673 1.18827 1.19270 1.18987 0.90890 0.91712 0.87931 0.89428 0.89783 0.88534 0.91783 0.91567 0.87964 0.79618 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.72 36.00 0.35 -0.97 16 2 C 0.10 1.88 6.83 -83.50 -0.57 1.31 16 3 N -0.46 -7.70 10.49 -7.47 -0.08 -7.77 16 4 C 0.03 0.45 5.96 -13.31 -0.08 0.37 16 5 C -0.04 -0.45 3.61 -90.20 -0.33 -0.78 16 6 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 7 C -0.15 -1.39 6.65 -25.16 -0.17 -1.55 16 8 C 0.04 0.37 7.63 37.93 0.29 0.66 16 9 O -0.37 -4.08 11.65 -35.23 -0.41 -4.49 16 10 C 0.05 0.53 7.14 37.93 0.27 0.80 16 11 S 0.12 1.88 21.10 -107.50 -2.27 -0.39 16 12 C -0.23 -4.61 6.51 -36.76 -0.24 -4.85 16 13 C 0.51 11.98 7.73 -12.91 -0.10 11.88 16 14 O -0.56 -14.83 13.90 5.16 0.07 -14.76 16 15 N -0.56 -13.52 5.08 -12.20 -0.06 -13.58 16 16 C -0.29 -7.97 10.16 -15.01 -0.15 -8.12 16 17 H 0.13 3.93 7.38 -52.49 -0.39 3.54 16 18 C 0.05 1.19 5.50 -17.45 -0.10 1.10 16 19 N -0.85 -23.46 13.96 55.50 0.77 -22.69 16 20 Si 0.87 18.44 27.74 -169.99 -4.71 13.73 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.19 6.52 56.52 0.37 -4.82 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.10 1.95 6.06 -51.92 -0.31 1.64 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.82 7.52 -51.93 -0.39 0.43 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.72 7.12 -51.92 -0.37 0.35 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.37 8.02 4.94 -40.82 -0.20 7.82 16 34 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -30.21 300.42 -6.77 -36.98 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.79 Total: 8.61 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.82 Total: -0.16 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.63 Total: -44.04 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.34 Total: -19.25 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.71 Total: 13.73 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.27 Total: -0.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.21 -6.77 -36.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.926 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds