Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99994 * 2 1 4 4 N 1.46499 * 109.47516 * 125.00239 * 3 2 1 5 5 C 1.46504 * 119.99875 * 263.21059 * 4 3 2 6 6 C 1.50699 * 109.46847 * 269.99618 * 5 4 3 7 7 H 1.08003 * 120.00244 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99985 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00113 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00068 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46676 * 90.00406 * 10 8 6 12 12 H 1.48494 * 109.47200 * 210.00354 * 10 8 6 13 13 H 1.48501 * 109.47272 * 330.00609 * 10 8 6 14 14 C 1.34773 * 120.00247 * 83.20580 * 4 3 2 15 15 O 1.21635 * 119.99842 * 183.43746 * 14 4 3 16 16 C 1.47268 * 119.99962 * 3.43841 * 14 4 3 17 17 C 1.35204 * 123.13782 * 173.51951 * 16 14 4 18 18 S 1.70946 * 108.82360 * 180.02562 * 17 16 14 19 19 C 1.70766 * 91.12863 * 359.97438 * 18 17 16 20 20 C 1.50702 * 124.71798 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46971 * 269.95668 * 20 19 18 22 22 N 1.28647 * 110.56439 * 0.02562 * 19 18 17 23 23 H 1.08002 * 119.99612 * 179.97438 * 1 2 3 24 24 H 1.07993 * 119.99963 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00545 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47052 * 4.99616 * 3 2 1 27 27 H 1.09008 * 109.47090 * 244.99859 * 3 2 1 28 28 H 1.08997 * 109.47120 * 29.99348 * 5 4 3 29 29 H 1.09000 * 109.47304 * 149.99470 * 5 4 3 30 30 H 0.96990 * 120.00555 * 179.97438 * 9 8 6 31 31 H 1.08002 * 125.58866 * 359.97438 * 17 16 14 32 32 H 1.08997 * 109.47276 * 29.95394 * 20 19 18 33 33 H 1.09001 * 109.47450 * 149.96205 * 20 19 18 34 34 H 0.96696 * 114.00212 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6111 1.9982 2.3788 6 6 3.0305 3.4446 2.3248 7 1 3.5316 3.8293 1.4488 8 6 2.7736 4.2773 3.3933 9 7 2.1629 3.8090 4.4599 10 14 3.2941 6.0700 3.3268 11 1 2.1947 6.8834 2.7480 12 1 3.5948 6.5495 4.6996 13 1 4.5066 6.2023 2.4796 14 6 4.2017 0.7437 1.0247 15 8 4.9492 0.7114 1.9837 16 6 4.6165 0.1401 -0.2529 17 6 5.8570 -0.3522 -0.4695 18 16 5.9384 -0.9598 -2.0653 19 6 4.3125 -0.5225 -2.3507 20 6 3.5774 -0.7499 -3.6465 21 8 3.7464 0.3869 -4.4958 22 7 3.8025 0.0279 -1.3058 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.5302 1.9378 2.5061 29 1 3.1038 1.5081 3.2185 30 1 1.9825 4.3946 5.2117 31 1 6.6644 -0.3595 0.2478 32 1 3.9774 -1.6352 -4.1407 33 1 2.5168 -0.8959 -3.4418 34 1 3.2987 0.3102 -5.3494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601590771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = 0.616134 kcal Electronic energy + Delta-G solvation = -19876.122904 eV Core-core repulsion = 16709.569094 eV Total energy + Delta-G solvation = -3166.553810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37998 -38.21581 -36.90882 -35.60873 -33.12135 -31.96959 -31.23025 -27.96979 -27.48894 -25.49683 -24.69890 -22.42540 -20.58623 -19.78358 -19.19584 -17.86430 -17.69117 -16.47068 -16.19224 -15.52892 -15.05645 -14.97189 -14.74316 -14.33920 -14.14010 -13.56639 -13.38457 -12.85247 -12.72026 -12.27945 -12.08600 -11.83836 -11.54389 -11.23679 -10.94454 -10.79063 -10.55566 -10.47819 -10.16032 -9.75301 -9.68322 -9.49524 -9.15749 -8.92677 -8.77745 -8.39635 -7.61674 -6.00836 -4.05633 0.53384 1.21383 1.61368 2.18456 2.67978 3.33273 3.39234 3.44358 3.64911 3.93011 4.11008 4.45424 4.50665 4.70974 5.04045 5.13117 5.26492 5.33649 5.41546 5.46983 5.64565 5.84440 6.07435 6.31274 6.59386 7.00886 7.06224 7.19198 7.25169 7.47158 7.48255 7.62873 7.95891 8.26138 8.41948 8.89313 9.06253 9.59071 11.07237 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.005123 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.576079 B = 5464.197691 C = 5863.861259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C 0.129 3.871 4 N -0.572 5.572 5 C 0.245 3.755 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.577 3.423 15 O -0.537 6.537 16 C 0.023 3.977 17 C -0.224 4.224 18 S 0.206 5.794 19 C 0.005 3.995 20 C 0.159 3.841 21 O -0.562 6.562 22 N -0.410 5.410 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.190 0.810 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -12.191 -18.617 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.152 4.152 3 C 0.005 3.995 4 N -0.300 5.300 5 C 0.126 3.874 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.361 3.639 15 O -0.414 6.414 16 C -0.112 4.112 17 C -0.366 4.366 18 S 0.462 5.538 19 C -0.274 4.274 20 C 0.078 3.922 21 O -0.368 6.368 22 N -0.127 5.127 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.861 -12.199 -18.005 21.936 hybrid contribution -0.421 1.198 0.480 1.358 sum 2.440 -11.001 -17.526 20.836 Atomic orbital electron populations 1.23711 0.95834 1.01288 1.03406 1.23249 0.95627 0.99050 0.97266 1.21020 0.92817 0.94498 0.91164 1.48081 1.13466 1.52057 1.16415 1.19381 0.96099 0.91825 0.80073 1.21438 1.38543 0.94294 1.02279 0.92402 1.24925 0.95083 0.98931 0.95077 1.69935 1.41647 1.35957 1.05774 0.86488 0.78963 0.84604 0.77335 1.20598 1.21065 1.19899 1.17042 0.82696 0.79213 0.84987 1.90783 1.52820 1.60074 1.37762 1.20932 0.90431 1.04278 0.95544 1.26639 1.02719 1.05142 1.02094 1.82588 1.11986 1.54016 1.05199 1.26865 0.96614 1.04580 0.99324 1.20345 0.98816 0.88295 0.84733 1.86557 1.77692 1.41187 1.31385 1.67386 1.33973 1.12631 0.98753 0.89222 0.88587 0.88418 0.90400 0.87335 0.94629 0.93651 0.92716 0.79313 0.91375 0.90219 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 14.32 29.02 0.42 -2.61 16 2 C -0.13 -2.22 8.81 -36.03 -0.32 -2.53 16 3 C 0.13 2.48 5.45 -5.20 -0.03 2.45 16 4 N -0.57 -13.36 2.46 -177.76 -0.44 -13.80 16 5 C 0.25 6.74 5.16 -5.19 -0.03 6.71 16 6 C -0.53 -15.49 9.39 -34.44 -0.32 -15.82 16 7 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 14 C 0.58 13.32 7.58 -12.59 -0.10 13.22 16 15 O -0.54 -14.15 16.29 5.25 0.09 -14.06 16 16 C 0.02 0.42 6.48 -84.53 -0.55 -0.13 16 17 C -0.22 -3.35 10.62 29.65 0.31 -3.04 16 18 S 0.21 2.22 22.92 -107.50 -2.46 -0.24 16 19 C 0.00 0.06 6.97 -13.61 -0.09 -0.04 16 20 C 0.16 1.35 7.62 36.01 0.27 1.63 16 21 O -0.56 -5.13 13.64 -35.23 -0.48 -5.61 16 22 N -0.41 -6.51 5.63 -8.51 -0.05 -6.56 16 23 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 24 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 25 H 0.10 1.63 7.68 -52.49 -0.40 1.23 16 26 H 0.08 1.53 7.67 -51.93 -0.40 1.14 16 27 H 0.11 2.04 5.28 -51.92 -0.27 1.76 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.19 2.67 8.04 -52.49 -0.42 2.25 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.39 1.39 9.12 45.56 0.42 1.81 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -35.76 314.46 -6.52 -42.28 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.11 Total: 0.67 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.53 Total: 1.58 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.25 Total: -46.74 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.40 Total: -19.67 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.46 Total: -0.24 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.76 -6.52 -42.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601590771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.900 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds