Wall clock time and date at job start Tue Mar 31 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38089 * 125.89611 * 123.68725 * 3 2 1 5 5 C 1.39342 * 107.52176 * 179.70220 * 4 3 2 6 6 C 1.38033 * 107.48344 * 0.41426 * 5 4 3 7 7 C 1.47002 * 125.91941 * 179.83741 * 6 5 4 8 8 O 1.21657 * 120.00055 * 359.70178 * 7 6 5 9 9 N 1.34777 * 120.00032 * 179.69414 * 7 6 5 10 10 C 1.39346 * 119.99776 * 174.99527 * 9 7 6 11 11 C 1.38641 * 119.57987 * 174.23984 * 10 9 7 12 12 C 1.40796 * 118.79037 * 180.02562 * 11 10 9 13 13 C 1.41544 * 120.99068 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99893 * 152.48777 * 13 12 11 15 15 C 1.40030 * 120.00445 * 332.47844 * 13 12 11 16 16 N 1.30740 * 119.99785 * 341.14134 * 15 13 12 17 17 Si 1.86796 * 120.00053 * 161.13537 * 15 13 12 18 18 H 1.48497 * 109.47458 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46948 * 120.00644 * 17 15 13 20 20 H 1.48498 * 109.47242 * 240.00025 * 17 15 13 21 21 C 1.41182 * 118.01167 * 359.97438 * 12 11 10 22 22 C 1.37587 * 119.02224 * 0.02909 * 21 12 11 23 23 N 1.32082 * 121.10968 * 359.97050 * 22 21 12 24 24 N 1.36734 * 125.89391 * 303.63884 * 3 2 1 25 25 H 0.97001 * 125.68359 * 0.02562 * 24 3 2 26 26 H 1.08002 * 126.23551 * 359.92149 * 4 3 2 27 27 H 1.07999 * 126.25248 * 180.27589 * 5 4 3 28 28 H 0.97003 * 119.99910 * 354.99448 * 9 7 6 29 29 H 1.07997 * 120.60100 * 0.02562 * 11 10 9 30 30 H 0.96997 * 119.99999 * 179.97438 * 16 15 13 31 31 H 1.08000 * 120.48763 * 180.02562 * 21 12 11 32 32 H 1.07996 * 119.44209 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3774 0.6215 -0.9308 5 6 4.6998 0.3842 -0.5615 6 6 4.6788 -0.3858 0.5839 7 6 5.8559 -0.8731 1.3173 8 8 6.9741 -0.6065 0.9189 9 7 5.6965 -1.6150 2.4311 10 6 6.8079 -2.1642 3.0674 11 6 6.6479 -2.8239 4.2763 12 6 7.7822 -3.3720 4.9050 13 6 7.6724 -4.0544 6.1402 14 1 8.3861 -4.8231 6.3977 15 6 6.6387 -3.7330 7.0284 16 7 6.0092 -2.5928 6.9136 17 14 6.1590 -4.9332 8.3769 18 1 7.0181 -6.1415 8.2929 19 1 6.3414 -4.2877 9.7019 20 1 4.7363 -5.3241 8.2086 21 6 9.0323 -3.2205 4.2666 22 6 9.0922 -2.5492 3.0671 23 7 8.0041 -2.0493 2.5097 24 7 3.3699 -0.6126 0.9222 25 1 3.0636 -1.1228 1.6882 26 1 3.0457 1.1905 -1.7868 27 1 5.5803 0.7363 -1.0784 28 1 4.8080 -1.7667 2.7897 29 1 5.6710 -2.9156 4.7274 30 1 5.2929 -2.3703 7.5286 31 1 9.9283 -3.6255 4.7132 32 1 10.0449 -2.4297 2.5726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611040139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:37 Heat of formation + Delta-G solvation = 79.551286 kcal Electronic energy + Delta-G solvation = -20005.601457 eV Core-core repulsion = 16739.319332 eV Total energy + Delta-G solvation = -3266.282125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.59275 -39.46081 -37.77269 -36.70292 -34.55553 -33.92802 -31.51769 -30.73871 -30.21750 -28.54684 -26.10361 -24.29296 -22.17273 -21.99359 -20.84368 -20.31050 -19.49404 -17.78651 -17.49299 -15.95040 -15.43971 -15.32144 -14.86471 -14.49865 -14.36225 -14.32058 -13.98970 -13.66697 -13.39852 -13.18347 -13.15733 -12.76993 -12.68777 -12.44171 -12.37041 -11.55825 -11.34185 -10.99327 -10.42689 -10.30121 -9.96072 -9.80583 -9.43271 -9.39833 -8.52525 -8.11041 -7.90878 -7.19375 -6.96336 -4.71002 0.80742 1.96380 2.00441 2.62418 2.67908 2.82512 2.96150 3.01262 3.13181 3.16469 3.30021 3.62406 3.71097 3.77715 4.55053 4.74832 4.91941 5.02978 5.53347 5.65160 5.78328 5.89228 6.24683 6.38350 6.47313 6.53557 6.68353 6.78090 6.84288 6.96119 7.11884 7.22245 7.28722 7.59128 7.75792 8.02608 8.26782 8.52660 8.61224 8.66559 9.51626 9.96482 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.004169 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.107503 B = 6715.387660 C = 8137.335427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.279 3.721 3 C 0.077 3.923 4 C -0.122 4.122 5 C -0.121 4.121 6 C 0.013 3.987 7 C 0.569 3.431 8 O -0.456 6.456 9 N -0.655 5.655 10 C 0.337 3.663 11 C -0.240 4.240 12 C 0.148 3.852 13 C -0.459 4.459 14 H 0.085 0.915 15 C 0.081 3.919 16 N -0.786 5.786 17 Si 0.908 3.092 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.279 4.279 22 C 0.122 3.878 23 N -0.555 5.555 24 N -0.515 5.515 25 H 0.423 0.577 26 H 0.157 0.843 27 H 0.162 0.838 28 H 0.402 0.598 29 H 0.120 0.880 30 H 0.282 0.718 31 H 0.104 0.896 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 2.904 -7.552 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.037 4.037 3 C -0.040 4.040 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.106 4.106 7 C 0.352 3.648 8 O -0.324 6.324 9 N -0.301 5.301 10 C 0.113 3.887 11 C -0.265 4.265 12 C 0.139 3.861 13 C -0.490 4.490 14 H 0.103 0.897 15 C -0.139 4.139 16 N -0.412 5.412 17 Si 0.732 3.268 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.196 1.196 21 C -0.303 4.303 22 C -0.032 4.032 23 N -0.274 5.274 24 N -0.113 5.113 25 H 0.262 0.738 26 H 0.175 0.825 27 H 0.179 0.821 28 H 0.236 0.764 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.965 3.615 -8.446 11.529 hybrid contribution -0.673 -1.225 2.218 2.622 sum -7.637 2.390 -6.228 10.140 Atomic orbital electron populations 1.81323 1.11255 1.08624 1.06854 1.24347 0.90850 0.93942 0.94512 1.15567 0.83059 1.08401 0.96975 1.21242 0.91612 1.02601 0.99595 1.21273 0.97649 1.00177 0.95545 1.21074 0.82201 1.06771 1.00572 1.17174 0.87284 0.79531 0.80769 1.90949 1.22868 1.53290 1.65301 1.43275 1.09063 1.50956 1.26774 1.18030 0.86166 0.94518 0.90028 1.21380 1.00473 1.09890 0.94789 1.17546 0.89614 0.87330 0.91565 1.19591 1.10739 1.18419 1.00285 0.89739 1.25937 0.94518 0.94684 0.98723 1.69793 1.18031 1.18990 1.34336 0.86254 0.79308 0.81322 0.79887 1.18173 1.19831 1.19611 1.21953 0.97722 1.10417 1.00226 1.21780 0.94858 0.93961 0.92632 1.67161 0.97209 1.26998 1.36007 1.41967 1.05391 1.41063 1.22857 0.73793 0.82531 0.82055 0.76412 0.86264 0.90684 0.87737 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.98 18.54 41.84 0.78 -4.21 16 2 C 0.28 2.89 15.89 -22.47 -0.36 2.53 16 3 C 0.08 0.73 6.93 -83.81 -0.58 0.15 16 4 C -0.12 -1.08 10.80 -39.23 -0.42 -1.50 16 5 C -0.12 -1.32 10.60 -39.25 -0.42 -1.74 16 6 C 0.01 0.16 7.04 -82.05 -0.58 -0.41 16 7 C 0.57 9.79 7.75 -12.71 -0.10 9.69 16 8 O -0.46 -9.68 15.16 5.23 0.08 -9.60 16 9 N -0.66 -11.59 5.38 -12.59 -0.07 -11.65 16 10 C 0.34 7.62 7.40 -154.80 -1.15 6.47 16 11 C -0.24 -5.71 8.60 -38.47 -0.33 -6.04 16 12 C 0.15 3.70 5.55 -106.55 -0.59 3.10 16 13 C -0.46 -11.31 9.09 -37.65 -0.34 -11.65 16 14 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 15 C 0.08 1.88 5.12 -17.34 -0.09 1.79 16 16 N -0.79 -18.68 11.30 55.55 0.63 -18.05 16 17 Si 0.91 17.21 29.60 -169.99 -5.03 12.18 16 18 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 C -0.28 -6.53 9.90 -38.70 -0.38 -6.91 16 22 C 0.12 2.76 11.15 -17.68 -0.20 2.56 16 23 N -0.55 -13.32 7.88 -12.54 -0.10 -13.42 16 24 N -0.52 -5.02 6.02 -6.96 -0.04 -5.06 16 25 H 0.42 3.20 8.17 -40.82 -0.33 2.87 16 26 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.40 5.55 7.81 -40.82 -0.32 5.23 16 29 H 0.12 2.79 6.56 -52.49 -0.34 2.45 16 30 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 31 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 32 H 0.13 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -30.62 301.99 -6.98 -37.59 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -2.24 Total: 9.63 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -5.53 Total: -1.96 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 1.19 Total: -52.39 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.62 -6.98 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611040139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.146 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds