Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00207 * 2 1 4 4 N 1.46498 * 109.46769 * 125.00304 * 3 2 1 5 5 C 1.37804 * 119.99782 * 179.72178 * 4 3 2 6 6 N 1.30264 * 124.74365 * 0.30780 * 5 4 3 7 7 C 1.30817 * 117.28081 * 179.97438 * 6 5 4 8 8 C 1.36833 * 114.01266 * 359.97438 * 7 6 5 9 9 C 1.41730 * 126.11720 * 179.97438 * 8 7 6 10 10 O 1.21684 * 119.99863 * 359.97438 * 9 8 7 11 11 O 1.34949 * 120.00381 * 180.02562 * 9 8 7 12 12 C 1.42900 * 117.00183 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47066 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47258 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99572 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99875 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00321 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99726 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46950 * 60.00686 * 18 16 14 20 20 H 1.48503 * 109.46872 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47491 * 300.00481 * 18 16 14 22 22 S 1.70917 * 124.74141 * 179.97438 * 5 4 3 23 23 H 1.08008 * 119.99728 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00364 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99918 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47210 * 5.00662 * 3 2 1 27 27 H 1.08994 * 109.47121 * 245.00632 * 3 2 1 28 28 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 29 29 H 1.07998 * 122.99540 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47089 * 299.99293 * 12 11 9 31 31 H 1.08994 * 109.47167 * 59.99684 * 12 11 9 32 32 H 1.09001 * 109.47288 * 300.00071 * 13 12 11 33 33 H 1.09009 * 109.46919 * 59.99636 * 13 12 11 34 34 H 0.97001 * 119.99795 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 3.8005 2.4304 1.3344 6 7 3.8079 3.4948 0.5835 7 6 4.6346 4.4542 0.9114 8 6 5.3855 4.1863 2.0235 9 6 6.3565 5.0415 2.6018 10 8 6.5846 6.1279 2.1032 11 8 7.0289 4.6507 3.7046 12 6 7.9927 5.5632 4.2342 13 6 8.6471 4.9509 5.4743 14 6 9.6640 5.9129 6.0325 15 1 9.8268 6.8659 5.5511 16 6 10.3855 5.5768 7.1582 17 7 10.1868 4.4166 7.7447 18 14 11.6455 6.7696 7.8505 19 1 10.9725 8.0401 8.2219 20 1 12.2807 6.1752 9.0541 21 1 12.6853 7.0413 6.8258 22 16 4.9254 2.5903 2.6112 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0897 27 1 2.6212 1.4026 -0.9314 28 1 3.0451 0.5742 1.7351 29 1 4.7171 5.3755 0.3540 30 1 8.7555 5.7631 3.4818 31 1 7.4986 6.4955 4.5074 32 1 7.8841 4.7512 6.2267 33 1 9.1411 4.0183 5.2014 34 1 10.6947 4.1800 8.5365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770118938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -24.185628 kcal Electronic energy + Delta-G solvation = -18254.477402 eV Core-core repulsion = 15086.848107 eV Total energy + Delta-G solvation = -3167.629295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30759 -39.48847 -37.11015 -36.03208 -33.73023 -33.29814 -30.67703 -29.64749 -27.19032 -25.40531 -24.39618 -22.38084 -20.93878 -20.69178 -19.57619 -19.12154 -17.33865 -16.67576 -16.33311 -16.10781 -15.90399 -15.53526 -15.24712 -14.65521 -14.52160 -14.03177 -13.80342 -13.30098 -12.92398 -12.75088 -12.33074 -11.70275 -11.57347 -11.23671 -11.02922 -10.76635 -10.68676 -10.66716 -10.34870 -10.11125 -9.84256 -9.57833 -9.55228 -9.44696 -9.27940 -8.40944 -8.00919 -6.07317 -4.11299 0.31821 0.80694 1.56592 1.60651 2.44081 2.89976 3.28266 3.32516 3.34739 3.36654 3.46343 4.18856 4.37875 4.42878 4.54311 5.04131 5.16098 5.22882 5.29085 5.29141 5.58580 5.75192 5.97437 6.07107 6.16125 6.16223 6.41830 6.64100 6.70100 7.02449 7.59278 7.63342 7.66405 7.90072 8.23084 8.31800 8.94033 9.52765 11.04236 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.002745 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.007513 B =10196.264127 C =10806.749509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.181 4.181 3 C 0.158 3.842 4 N -0.681 5.681 5 C 0.311 3.689 6 N -0.556 5.556 7 C 0.188 3.812 8 C -0.333 4.333 9 C 0.543 3.457 10 O -0.516 6.516 11 O -0.351 6.351 12 C 0.074 3.926 13 C 0.026 3.974 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 S 0.194 5.806 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.418 0.582 29 H 0.191 0.809 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 -10.512 -14.794 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 C 0.033 3.967 4 N -0.320 5.320 5 C -0.056 4.056 6 N -0.282 5.282 7 C 0.028 3.972 8 C -0.457 4.457 9 C 0.388 3.612 10 O -0.408 6.408 11 O -0.268 6.268 12 C 0.001 3.999 13 C -0.011 4.011 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 S 0.446 5.554 23 H 0.120 0.880 24 H 0.123 0.877 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.256 0.744 29 H 0.207 0.793 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.710 -10.986 -14.470 26.080 hybrid contribution 0.853 1.176 0.129 1.458 sum -17.858 -9.810 -14.340 24.915 Atomic orbital electron populations 1.24025 0.95748 1.02610 0.97359 1.23000 0.96279 0.98071 1.02651 1.20514 0.91323 0.95723 0.89103 1.43900 1.40210 1.15883 1.31959 1.24112 0.94718 0.91486 0.95303 1.66271 1.27965 1.01569 1.32361 1.22165 0.86915 0.96899 0.91257 1.23500 1.13143 1.01359 1.07745 1.18095 0.79421 0.84362 0.79282 1.90864 1.65423 1.22201 1.62304 1.86214 1.50884 1.49408 1.40253 1.23238 0.87834 0.91477 0.97359 1.19162 0.95272 0.97083 0.89592 1.20960 1.21005 1.02837 1.11565 0.92270 1.24981 0.97201 0.95450 0.96551 1.69964 1.41305 1.21090 1.20591 0.86531 0.81348 0.81008 0.78401 1.20066 1.21162 1.20071 1.84414 1.32296 1.13516 1.25176 0.88020 0.87718 0.86518 0.90691 0.90273 0.74441 0.79269 0.92471 0.92481 0.95400 0.95402 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 14.32 29.01 0.42 -0.23 16 2 C -0.18 -0.83 9.63 -36.03 -0.35 -1.18 16 3 C 0.16 1.03 6.36 -5.19 -0.03 1.00 16 4 N -0.68 -5.19 5.67 -63.59 -0.36 -5.55 16 5 C 0.31 3.42 8.05 -87.99 -0.71 2.71 16 6 N -0.56 -7.02 10.06 -14.75 -0.15 -7.17 16 7 C 0.19 2.56 11.08 -18.49 -0.20 2.35 16 8 C -0.33 -5.19 6.32 -38.76 -0.25 -5.43 16 9 C 0.54 10.46 7.73 32.07 0.25 10.71 16 10 O -0.52 -10.86 16.55 -19.41 -0.32 -11.18 16 11 O -0.35 -7.46 9.91 -41.18 -0.41 -7.87 16 12 C 0.07 1.72 5.32 37.16 0.20 1.91 16 13 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 14 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 S 0.19 2.42 22.99 -107.50 -2.47 -0.05 16 23 H 0.10 0.40 7.84 -52.48 -0.41 -0.01 16 24 H 0.10 0.31 8.06 -52.49 -0.42 -0.11 16 25 H 0.12 0.42 8.06 -52.49 -0.42 0.00 16 26 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.42 2.23 8.59 -40.82 -0.35 1.88 16 29 H 0.19 2.28 8.04 -52.49 -0.42 1.86 16 30 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -33.04 323.13 -8.45 -41.49 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.09 Total: -3.93 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.24 Total: -1.33 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.23 Total: -38.63 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.73 Total: -19.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.47 Total: -0.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.04 -8.45 -41.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770118938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.305 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds