Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00233 * 3 2 1 5 5 H 1.48494 * 109.47138 * 30.00310 * 3 2 1 6 6 H 1.48504 * 109.46846 * 150.00201 * 3 2 1 7 7 C 1.37879 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47211 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47754 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47503 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00097 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99848 * 179.97438 * 13 12 11 16 16 C 1.39999 * 119.99839 * 185.58205 * 15 13 12 17 17 C 1.39207 * 120.49252 * 24.60219 * 16 15 13 18 18 C 1.38558 * 118.37645 * 180.23516 * 17 16 15 19 19 C 1.38222 * 119.26074 * 359.46779 * 18 17 16 20 20 N 1.31888 * 120.93308 * 0.26795 * 19 18 17 21 21 C 1.31886 * 121.77752 * 0.02562 * 20 19 18 22 22 Cl 1.73608 * 119.68442 * 179.97438 * 21 20 19 23 23 H 0.97001 * 119.99951 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47030 * 60.00187 * 9 7 2 25 25 H 1.09000 * 109.47320 * 299.99715 * 9 7 2 26 26 H 1.09003 * 109.47231 * 60.00113 * 10 9 7 27 27 H 1.09001 * 109.47729 * 299.99733 * 10 9 7 28 28 H 1.08996 * 109.47543 * 59.99966 * 11 10 9 29 29 H 1.09000 * 109.47062 * 300.00236 * 11 10 9 30 30 H 1.09003 * 109.47258 * 59.99799 * 12 11 10 31 31 H 1.09000 * 109.46730 * 300.00074 * 12 11 10 32 32 H 0.96996 * 120.00132 * 5.59236 * 15 13 12 33 33 H 1.08000 * 120.80812 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.36855 * 179.73732 * 18 17 16 35 35 H 1.08000 * 119.53036 * 180.25642 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4551 -0.0018 14 8 0.5081 -7.4551 -0.0009 15 7 2.3949 -8.6223 -0.0029 16 6 1.6998 -9.8318 -0.1208 17 6 0.4484 -9.8709 -0.7294 18 6 -0.2028 -11.0906 -0.8182 19 6 0.4103 -12.2222 -0.3140 20 7 1.5994 -12.1536 0.2523 21 6 2.2514 -11.0125 0.3627 22 17 3.8139 -10.9847 1.1189 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 0.8526 -5.0447 -0.8904 29 1 0.8546 -5.0449 0.8895 30 1 3.1018 -6.0922 0.8877 31 1 3.1004 -6.0923 -0.8923 32 1 3.3614 -8.6243 0.0782 33 1 -0.0055 -8.9717 -1.1190 34 1 -1.1768 -11.1572 -1.2802 35 1 -0.0916 -13.1758 -0.3846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808068914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = -27.997032 kcal Electronic energy + Delta-G solvation = -18526.809029 eV Core-core repulsion = 15356.970753 eV Total energy + Delta-G solvation = -3169.838276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22110 -39.56156 -37.04620 -35.59935 -34.94205 -32.81308 -32.39210 -30.75800 -29.39087 -25.92031 -24.39610 -23.70919 -22.24269 -20.53542 -20.08287 -18.45201 -17.53263 -17.29555 -16.39722 -16.18618 -15.76188 -14.97220 -14.89764 -14.53021 -14.22751 -14.14497 -13.47502 -12.86108 -12.68386 -12.42081 -12.12897 -11.80993 -11.72040 -11.67154 -11.39017 -11.03240 -10.62585 -10.56581 -10.48784 -10.44740 -10.00864 -9.69382 -9.67272 -9.28381 -9.03340 -8.61687 -8.33687 -5.98494 -4.01149 0.48295 0.80071 1.41478 2.34838 2.59079 3.31766 3.31966 3.38269 3.41250 4.13810 4.28605 4.43654 4.47565 4.66101 4.79226 4.97595 5.14809 5.19923 5.37084 5.47039 5.67416 5.75070 5.81162 6.02676 6.17864 6.25579 6.44736 6.74666 6.89495 6.95977 7.14340 7.31942 7.69929 7.79510 7.84921 8.02306 8.43991 9.06490 9.62810 11.12827 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037980 B = 0.002612 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.048086 B =10716.264271 C =11361.497048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.510 6.510 15 N -0.671 5.671 16 C 0.129 3.871 17 C -0.081 4.081 18 C -0.143 4.143 19 C 0.090 3.910 20 N -0.457 5.457 21 C 0.136 3.864 22 Cl -0.031 7.031 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.416 0.584 33 H 0.168 0.832 34 H 0.147 0.853 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -24.736 -1.456 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.305 3.695 14 O -0.384 6.384 15 N -0.317 5.317 16 C 0.029 3.971 17 C -0.109 4.109 18 C -0.163 4.163 19 C -0.069 4.069 20 N -0.168 5.168 21 C -0.032 4.032 22 Cl -0.002 7.002 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.253 0.747 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.155 -25.258 -1.062 25.620 hybrid contribution 0.732 1.574 -0.155 1.743 sum 4.887 -23.684 -1.217 24.214 Atomic orbital electron populations 1.69969 1.06062 1.26564 1.50868 1.25040 0.94841 0.99256 0.95410 0.86610 0.79835 0.83568 0.78070 1.20688 1.21237 1.19908 1.21274 0.92990 0.91175 1.50514 0.92736 1.19091 0.94029 0.91253 0.97327 1.21654 0.99130 0.93800 1.00240 1.21493 0.96960 0.92619 1.03168 1.21866 1.00311 0.90812 1.04756 1.21482 0.88596 0.85253 0.74152 1.90678 1.14106 1.87164 1.46405 1.43842 1.11377 1.03835 1.72653 1.18409 0.94605 0.85742 0.98302 1.21977 0.92883 1.00282 0.95720 1.22238 1.01575 0.92468 1.00018 1.22625 0.89811 0.99265 0.95170 1.66935 1.09051 1.26089 1.14700 1.21337 0.91329 0.89721 1.00783 1.98402 1.23654 1.98237 1.79953 0.93010 0.96587 0.96566 0.93338 0.93340 0.91595 0.91579 0.88421 0.88335 0.74669 0.81523 0.83476 0.81612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.10 -1.71 4.50 -26.73 -0.12 -1.83 16 12 C -0.14 -1.60 5.70 -27.89 -0.16 -1.76 16 13 C 0.52 6.36 7.65 -10.99 -0.08 6.28 16 14 O -0.51 -7.95 13.19 5.55 0.07 -7.88 16 15 N -0.67 -6.74 5.20 -9.73 -0.05 -6.79 16 16 C 0.13 1.42 6.45 -83.48 -0.54 0.88 16 17 C -0.08 -0.86 8.83 -39.10 -0.35 -1.20 16 18 C -0.14 -1.16 10.10 -39.47 -0.40 -1.56 16 19 C 0.09 0.75 11.17 -17.53 -0.20 0.55 16 20 N -0.46 -4.99 10.33 -10.21 -0.11 -5.09 16 21 C 0.14 1.48 7.29 -17.25 -0.13 1.36 16 22 Cl -0.03 -0.29 27.95 -51.86 -1.45 -1.74 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.42 3.15 7.77 -40.82 -0.32 2.83 16 33 H 0.17 1.95 5.89 -52.49 -0.31 1.64 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -33.20 318.09 -8.07 -41.27 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.39 Total: -1.96 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.66 Total: -12.78 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.58 Total: -38.33 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.45 Total: -1.74 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.20 -8.07 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808068914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.270 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds