Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99893 * 2 1 4 4 H 1.48499 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47340 * 300.00018 * 3 2 1 6 6 H 1.48508 * 109.47343 * 60.00347 * 3 2 1 7 7 C 1.37878 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47353 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47353 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47036 * 179.97438 * 12 11 10 14 14 O 1.21273 * 120.00088 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99843 * 180.27669 * 13 12 11 16 16 C 1.39410 * 119.99934 * 174.63354 * 15 13 12 17 17 C 1.38998 * 119.68600 * 185.09938 * 16 15 13 18 18 C 1.38400 * 119.13278 * 179.76985 * 17 16 15 19 19 C 1.38784 * 118.50696 * 0.50152 * 18 17 16 20 20 C 1.38251 * 119.29574 * 359.74310 * 19 18 17 21 21 Cl 1.73602 * 119.58766 * 179.97438 * 20 19 18 22 22 N 1.32026 * 120.81756 * 0.02562 * 20 19 18 23 23 H 0.97004 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46808 * 59.99952 * 9 7 2 25 25 H 1.09000 * 109.46966 * 300.00091 * 9 7 2 26 26 H 1.09000 * 109.47427 * 60.00070 * 10 9 7 27 27 H 1.09000 * 109.47410 * 299.99932 * 10 9 7 28 28 H 1.09000 * 109.46933 * 59.99601 * 11 10 9 29 29 H 1.09000 * 109.46671 * 300.00218 * 11 10 9 30 30 H 1.09000 * 109.47427 * 59.99903 * 12 11 10 31 31 H 1.09000 * 109.47410 * 299.99765 * 12 11 10 32 32 H 0.97002 * 119.99894 * 354.62718 * 15 13 12 33 33 H 1.08000 * 120.43673 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.75105 * 180.21407 * 18 17 16 35 35 H 1.07996 * 120.35222 * 179.76993 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6620 0.0015 11 6 1.4802 -4.9871 0.0020 12 6 2.4744 -6.1500 0.0011 13 6 1.7209 -7.4551 0.0023 14 8 0.5082 -7.4551 0.0032 15 7 2.3948 -8.6223 0.0074 16 6 1.7020 -9.8267 0.1214 17 6 2.4078 -11.0189 0.2330 18 6 1.7084 -12.2075 0.3504 19 6 0.3213 -12.1635 0.3415 20 6 -0.3160 -10.9425 0.2219 21 17 -2.0508 -10.8787 0.2092 22 7 0.3783 -9.8245 0.1163 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8920 26 1 2.8726 -3.6040 0.8909 27 1 2.8712 -3.6048 -0.8890 28 1 0.8531 -5.0450 -0.8877 29 1 0.8540 -5.0447 0.8923 30 1 3.1019 -6.0924 0.8905 31 1 3.1003 -6.0923 -0.8894 32 1 3.3618 -8.6243 -0.0684 33 1 3.4878 -11.0175 0.2324 34 1 2.2303 -13.1485 0.4422 35 1 -0.2541 -13.0733 0.4275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808465257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = -16.542910 kcal Electronic energy + Delta-G solvation = -18443.999658 eV Core-core repulsion = 15274.658070 eV Total energy + Delta-G solvation = -3169.341588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07247 -39.27491 -36.86154 -35.23146 -34.76212 -32.88248 -32.58756 -30.64930 -29.40966 -25.90671 -24.25073 -23.70089 -22.17288 -20.39280 -19.98964 -18.52595 -17.22993 -16.61861 -16.17092 -16.02613 -15.91525 -15.26015 -14.91061 -14.45826 -13.99166 -13.86296 -13.61968 -12.67733 -12.57805 -12.48720 -11.99841 -11.73173 -11.60382 -11.45512 -11.00152 -10.86627 -10.55437 -10.50240 -10.43121 -10.36134 -10.07198 -9.61417 -9.41878 -9.17665 -8.96428 -8.59707 -8.29932 -5.94369 -3.96960 0.57098 0.86319 1.56405 2.59234 2.65001 3.33749 3.40897 3.44051 3.44651 4.11315 4.46825 4.49433 4.53156 4.67372 4.86832 4.88274 5.23993 5.30564 5.40269 5.41052 5.67058 5.75248 5.80214 6.11342 6.26090 6.32176 6.53303 6.82572 6.83616 7.01811 7.20413 7.59687 7.75298 7.90844 8.07038 8.13853 8.48543 9.11054 9.66738 11.16992 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.002601 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.500734 B =10761.731619 C =11553.976107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.135 4.135 13 C 0.498 3.502 14 O -0.459 6.459 15 N -0.667 5.667 16 C 0.387 3.613 17 C -0.211 4.211 18 C -0.035 4.035 19 C -0.195 4.195 20 C 0.210 3.790 21 Cl -0.027 7.027 22 N -0.474 5.474 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.419 0.581 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -28.473 0.585 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.175 4.175 13 C 0.284 3.716 14 O -0.326 6.326 15 N -0.315 5.315 16 C 0.155 3.845 17 C -0.235 4.235 18 C -0.061 4.061 19 C -0.217 4.217 20 C 0.045 3.955 21 Cl 0.002 6.998 22 N -0.191 5.191 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.257 0.743 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.917 -27.390 0.512 27.832 hybrid contribution 1.215 0.201 0.033 1.232 sum 6.132 -27.189 0.545 27.877 Atomic orbital electron populations 1.69988 1.06052 1.26405 1.50977 1.25049 0.94838 0.99252 0.95481 0.86557 0.80059 0.83942 0.77549 1.19790 1.21052 1.21055 1.21313 0.92999 0.91180 1.50314 0.92705 1.19103 0.94065 0.91262 0.97371 1.21642 0.99078 0.93882 1.00103 1.21487 0.97008 0.92615 1.03192 1.21835 1.00191 0.91191 1.04302 1.21514 0.89053 0.85031 0.75961 1.90847 1.13463 1.86371 1.41922 1.44000 1.10990 1.03857 1.72607 1.18306 0.87396 0.86227 0.92615 1.21568 1.01502 0.91623 1.08772 1.21333 0.93041 0.98323 0.93361 1.21730 0.95322 0.97661 1.07009 1.21468 0.87854 0.89245 0.96973 1.98424 1.06573 1.98599 1.96238 1.66861 1.06412 1.29696 1.16116 0.93087 0.96558 0.96556 0.93426 0.93423 0.91625 0.91641 0.88752 0.88790 0.74345 0.83858 0.83446 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.70 5.70 -27.88 -0.16 -1.86 16 13 C 0.50 6.96 7.79 -10.98 -0.09 6.88 16 14 O -0.46 -8.69 14.25 5.56 0.08 -8.61 16 15 N -0.67 -6.74 5.39 -11.43 -0.06 -6.80 16 16 C 0.39 4.38 7.42 -154.70 -1.15 3.23 16 17 C -0.21 -1.53 9.94 -39.24 -0.39 -1.92 16 18 C -0.03 -0.22 10.17 -39.32 -0.40 -0.62 16 19 C -0.19 -1.60 9.87 -39.37 -0.39 -1.99 16 20 C 0.21 2.54 7.27 -17.46 -0.13 2.41 16 21 Cl -0.03 -0.32 29.10 -51.86 -1.51 -1.83 16 22 N -0.47 -6.90 7.87 -9.48 -0.07 -6.97 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.42 2.32 8.70 -40.82 -0.36 1.96 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -36.59 322.08 -9.05 -45.63 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -4.54 Total: -4.60 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.51 Total: -11.66 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.60 Total: -40.75 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.59 -9.05 -45.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808465257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.092 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds