Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00265 * 2 1 4 4 H 1.48495 * 109.46866 * 270.00274 * 3 2 1 5 5 H 1.48508 * 109.46771 * 30.00209 * 3 2 1 6 6 H 1.48498 * 109.47111 * 149.99814 * 3 2 1 7 7 C 1.37873 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00206 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99594 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46806 * 180.02562 * 11 10 9 13 13 O 1.45206 * 109.47053 * 65.00075 * 12 11 10 14 14 C 1.34711 * 116.99732 * 179.97438 * 13 12 11 15 15 O 1.21459 * 120.00088 * 0.02562 * 14 13 12 16 16 C 1.47750 * 119.99764 * 180.02562 * 14 13 12 17 17 C 1.39567 * 120.09749 * 359.71985 * 16 14 13 18 18 C 1.38502 * 119.90244 * 180.27382 * 17 16 14 19 19 O 1.35910 * 119.95119 * 179.97438 * 18 17 16 20 20 C 1.38739 * 120.09517 * 0.02562 * 18 17 16 21 21 C 1.38736 * 120.20060 * 359.97438 * 20 18 17 22 22 O 1.35906 * 119.95227 * 179.97438 * 21 20 18 23 23 C 1.38496 * 120.09679 * 359.97438 * 21 20 18 24 24 H 0.97006 * 120.00109 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47158 * 59.99837 * 9 7 2 26 26 H 1.09000 * 109.47602 * 299.99716 * 9 7 2 27 27 H 1.09001 * 109.47206 * 60.00535 * 11 10 9 28 28 H 1.08996 * 109.47796 * 299.99961 * 11 10 9 29 29 H 1.08994 * 109.47131 * 305.00065 * 12 11 10 30 30 H 1.09005 * 109.47032 * 185.00178 * 12 11 10 31 31 H 1.08006 * 120.05022 * 0.26109 * 17 16 14 32 32 H 0.96696 * 114.00281 * 270.02331 * 19 18 17 33 33 H 1.07999 * 119.89812 * 180.02562 * 20 18 17 34 34 H 0.96695 * 113.99800 * 270.01766 * 22 21 20 35 35 H 1.07998 * 120.05290 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5650 -4.8754 0.0031 12 6 2.6479 -5.9562 0.0033 13 8 3.4001 -5.8874 1.2435 14 6 4.3978 -6.7782 1.4038 15 8 4.6333 -7.5898 0.5314 16 6 5.2056 -6.7680 2.6409 17 6 4.9405 -5.8325 3.6421 18 6 5.7040 -5.8229 4.7977 19 8 5.4470 -4.9121 5.7731 20 6 6.7313 -6.7410 4.9605 21 6 6.9984 -7.6727 3.9678 22 8 8.0063 -8.5695 4.1323 23 6 6.2394 -7.6903 2.8095 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5574 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 0.9439 -4.9831 -0.8862 28 1 0.9458 -4.9818 0.8938 29 1 3.3209 -5.7964 -0.8390 30 1 2.1818 -6.9376 -0.0850 31 1 4.1414 -5.1171 3.5160 32 1 5.9373 -4.0842 5.6773 33 1 7.3243 -6.7309 5.8630 34 1 8.8622 -8.2641 3.8019 35 1 6.4482 -8.4157 2.0370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815230087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = -193.016065 kcal Electronic energy + Delta-G solvation = -21013.242957 eV Core-core repulsion = 17363.247002 eV Total energy + Delta-G solvation = -3649.995954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79927 -39.79491 -38.14502 -37.16367 -36.16581 -35.82397 -32.80556 -31.26296 -30.03404 -29.62805 -26.98910 -24.91762 -22.94287 -22.48981 -22.13465 -21.14082 -19.33698 -17.66493 -17.42795 -16.93077 -16.55393 -16.49483 -16.22172 -16.04813 -15.44570 -15.29249 -14.66392 -14.52213 -14.35359 -13.65335 -13.20250 -13.08919 -12.76918 -12.33954 -12.16703 -11.97786 -11.47579 -11.38102 -11.12329 -10.97168 -10.87686 -10.80477 -10.50037 -10.42291 -10.08068 -9.32608 -9.16217 -8.96763 -8.91118 -8.24688 -6.14725 -4.16649 0.32890 0.79363 2.29290 2.57590 3.23684 3.27810 3.32888 3.37828 3.68139 3.97871 4.29341 4.45746 4.68543 4.71801 4.82548 4.88724 5.17629 5.21937 5.23551 5.29786 5.41973 5.80516 5.83731 5.87448 5.90461 5.97970 6.06922 6.14853 6.46838 7.02410 7.18269 7.34075 7.36754 7.71996 7.75178 8.09390 8.48796 8.95712 9.48234 10.96829 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.003558 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.886414 B = 7866.687450 C = 8944.013709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.334 6.334 14 C 0.509 3.491 15 O -0.509 6.509 16 C -0.087 4.087 17 C -0.092 4.092 18 C 0.113 3.887 19 O -0.492 6.492 20 C -0.140 4.140 21 C 0.109 3.891 22 O -0.492 6.492 23 C -0.093 4.093 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.397 0.603 33 H 0.141 0.859 34 H 0.394 0.606 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.107 -13.848 8.209 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.002 3.998 13 O -0.249 6.249 14 C 0.353 3.647 15 O -0.399 6.399 16 C -0.089 4.089 17 C -0.110 4.110 18 C 0.068 3.932 19 O -0.303 6.303 20 C -0.159 4.159 21 C 0.064 3.936 22 O -0.303 6.303 23 C -0.111 4.111 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.173 0.827 32 H 0.254 0.746 33 H 0.159 0.841 34 H 0.250 0.750 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.362 -14.681 8.395 20.948 hybrid contribution 0.649 1.443 -0.496 1.658 sum 13.011 -13.237 7.898 20.171 Atomic orbital electron populations 1.69956 1.06115 1.27237 1.50426 1.24947 0.94982 0.99452 0.95088 0.86327 0.79650 0.82205 0.78253 1.20452 1.21037 1.19621 1.21039 0.94078 0.89291 1.50987 0.91524 1.20242 0.88735 0.83459 0.95541 1.87915 1.35353 1.12618 1.95244 1.22333 0.93193 0.85410 1.00722 1.23286 0.93622 0.99024 0.83891 1.86638 1.43033 1.53380 1.41894 1.20975 0.78979 0.78388 0.86341 1.90817 1.68128 1.38023 1.42909 1.18807 0.97752 0.98918 0.93402 1.21970 0.99663 0.98260 0.91139 1.18082 0.94266 0.92673 0.88146 1.84854 1.69730 1.28610 1.47071 1.21941 0.98405 0.95348 1.00251 1.17928 0.92226 0.90718 0.92728 1.84862 1.19740 1.41327 1.84337 1.21527 0.94329 0.97792 0.97477 0.92594 0.97597 0.97454 0.91756 0.93086 0.90256 0.90179 0.82744 0.74609 0.84128 0.75003 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -15.03 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.25 5.69 36.00 0.20 5.45 16 10 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 11 C 0.06 1.09 6.33 37.16 0.24 1.33 16 12 C 0.08 1.18 5.85 37.16 0.22 1.39 16 13 O -0.33 -5.53 9.44 -43.30 -0.41 -5.94 16 14 C 0.51 7.79 7.90 34.62 0.27 8.07 16 15 O -0.51 -8.51 16.13 -19.23 -0.31 -8.82 16 16 C -0.09 -1.12 5.87 -105.02 -0.62 -1.74 16 17 C -0.09 -1.11 9.55 -38.99 -0.37 -1.48 16 18 C 0.11 1.18 6.69 -39.30 -0.26 0.92 16 19 O -0.49 -4.71 13.50 -19.46 -0.26 -4.97 16 20 C -0.14 -1.29 9.91 -39.21 -0.39 -1.68 16 21 C 0.11 1.04 6.69 -39.30 -0.26 0.77 16 22 O -0.49 -3.89 13.50 -19.45 -0.26 -4.15 16 23 C -0.09 -1.03 9.53 -38.99 -0.37 -1.40 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.15 1.99 7.61 -52.48 -0.40 1.59 16 32 H 0.40 1.95 9.06 45.56 0.41 2.36 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.39 1.12 9.06 45.56 0.41 1.53 16 35 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -35.33 322.31 -5.32 -40.64 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -2.48 Total: -0.38 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.77 Total: -2.20 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.64 Total: -33.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.33 -5.32 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.374 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds