Wall clock time and date at job start Tue Mar 31 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48507 * 109.47239 * 239.99992 * 3 2 1 5 5 H 1.48494 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46824 * 120.00501 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34751 * 116.99894 * 179.97438 * 13 12 11 15 15 O 1.21502 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.47406 * 119.99614 * 179.97438 * 14 13 12 17 17 C 1.39866 * 120.17610 * 359.72493 * 16 14 13 18 18 C 1.37721 * 119.99615 * 179.78566 * 17 16 14 19 19 C 1.38563 * 120.35427 * 0.46872 * 18 17 16 20 20 C 1.38416 * 120.34709 * 359.78519 * 19 18 17 21 21 O 1.35998 * 120.00509 * 179.97438 * 20 19 18 22 22 C 1.39184 * 119.99883 * 359.97438 * 20 19 18 23 23 O 1.35722 * 120.17679 * 180.02562 * 22 20 19 24 24 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 26 26 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 27 27 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 28 28 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 29 29 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 30 30 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 31 31 H 1.08002 * 119.99651 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.82125 * 180.20985 * 18 17 16 33 33 H 1.07994 * 119.82639 * 179.76255 * 19 18 17 34 34 H 0.96696 * 114.00565 * 269.98523 * 21 20 19 35 35 H 0.96700 * 114.00429 * 269.97377 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3983 -6.7797 1.3991 15 8 4.6333 -7.5914 0.5261 16 6 5.2049 -6.7697 2.6329 17 6 4.9412 -5.8332 3.6377 18 6 5.6943 -5.8300 4.7908 19 6 6.7211 -6.7450 4.9590 20 6 6.9980 -7.6748 3.9716 21 8 8.0079 -8.5693 4.1438 22 6 6.2429 -7.6943 2.8026 23 8 6.5110 -8.6047 1.8324 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9446 -4.9827 -0.8897 28 1 0.9452 -4.9822 0.8902 29 1 3.3210 -5.7957 -0.8430 30 1 2.1820 -6.9376 -0.0898 31 1 4.1445 -5.1151 3.5109 32 1 5.4860 -5.1078 5.5663 33 1 7.3088 -6.7324 5.8649 34 1 8.8652 -8.2621 3.8188 35 1 7.1539 -8.3026 1.1763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815234004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:40 Heat of formation + Delta-G solvation = -190.271292 kcal Electronic energy + Delta-G solvation = -21226.612506 eV Core-core repulsion = 17576.735574 eV Total energy + Delta-G solvation = -3649.876932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88772 -39.68083 -37.38899 -36.89007 -36.77097 -35.87722 -32.80060 -31.37327 -29.90226 -29.52403 -26.97095 -24.76895 -22.88637 -22.46843 -22.11708 -21.07085 -19.17216 -18.34721 -17.26487 -16.95479 -16.52855 -16.38890 -16.13936 -15.75254 -15.29849 -14.93781 -14.64256 -14.57031 -14.30204 -13.63814 -13.08104 -12.92159 -12.64877 -12.54077 -12.21201 -11.96120 -11.59041 -11.43772 -10.98294 -10.93692 -10.83950 -10.76255 -10.39276 -10.19835 -10.05244 -9.29390 -9.16834 -8.92114 -8.89980 -8.23925 -6.14306 -4.16294 0.35804 0.82025 2.43360 2.65310 3.29862 3.31729 3.32763 3.36415 3.74776 3.84162 4.29873 4.49744 4.62937 4.71735 4.86810 5.00081 5.21874 5.22203 5.30596 5.38072 5.44473 5.78902 5.84401 5.85541 5.94476 6.01763 6.09307 6.28234 6.54566 7.02991 7.08342 7.37230 7.47873 7.75021 7.83212 8.09965 8.49700 8.95929 9.48502 10.97197 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.003406 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.829396 B = 8217.624894 C = 9082.900286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.337 6.337 14 C 0.506 3.494 15 O -0.498 6.498 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.126 4.126 19 C -0.097 4.097 20 C 0.062 3.938 21 O -0.484 6.484 22 C 0.146 3.854 23 O -0.469 6.469 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.387 0.613 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -13.934 8.248 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.253 6.253 14 C 0.350 3.650 15 O -0.387 6.387 16 C -0.140 4.140 17 C -0.067 4.067 18 C -0.144 4.144 19 C -0.116 4.116 20 C 0.016 3.984 21 O -0.294 6.294 22 C 0.099 3.901 23 O -0.279 6.279 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.243 0.757 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 12.383 -14.705 8.493 21.017 hybrid contribution 0.693 1.315 -0.632 1.615 sum 13.076 -13.391 7.860 20.300 Atomic orbital electron populations 1.69945 1.06115 1.27348 1.50359 1.24947 0.94980 0.99439 0.95078 0.86384 0.79311 0.81847 0.78862 1.20004 1.21133 1.19978 1.21009 0.94054 0.89311 1.51099 0.91564 1.20230 0.88733 0.83460 0.95518 1.87913 1.35345 1.12622 1.95239 1.22330 0.93226 0.85400 1.00658 1.23240 0.93579 0.98904 0.83994 1.86634 1.43275 1.53615 1.41815 1.20815 0.79245 0.78566 0.86393 1.90843 1.67802 1.37348 1.42692 1.19553 0.99707 0.99583 0.95177 1.21643 0.98129 0.95599 0.91362 1.21118 0.95645 0.99445 0.98181 1.21621 0.98089 0.93020 0.98826 1.18562 0.92991 0.92870 0.93938 1.84951 1.19074 1.41283 1.84050 1.18808 0.93689 0.88265 0.89316 1.84823 1.65815 1.38415 1.38858 0.92541 0.97609 0.97493 0.91838 0.93126 0.90409 0.90305 0.83017 0.84113 0.84351 0.75725 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.06 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.26 5.69 36.00 0.20 5.47 16 10 O -0.39 -9.35 10.30 -38.79 -0.40 -9.75 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.08 1.22 5.85 37.16 0.22 1.44 16 13 O -0.34 -5.68 9.44 -43.41 -0.41 -6.09 16 14 C 0.51 8.03 7.89 34.46 0.27 8.30 16 15 O -0.50 -8.62 14.95 -26.60 -0.40 -9.02 16 16 C -0.14 -1.84 5.88 -104.88 -0.62 -2.46 16 17 C -0.05 -0.56 9.61 -39.16 -0.38 -0.94 16 18 C -0.13 -1.12 10.02 -39.65 -0.40 -1.51 16 19 C -0.10 -0.82 9.97 -39.40 -0.39 -1.21 16 20 C 0.06 0.62 6.71 -39.16 -0.26 0.35 16 21 O -0.48 -4.21 13.29 -34.26 -0.46 -4.67 16 22 C 0.15 1.77 6.73 -38.55 -0.26 1.51 16 23 O -0.47 -5.75 11.36 -47.47 -0.54 -6.29 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.15 1.77 7.61 -52.49 -0.40 1.37 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.39 1.36 9.06 45.56 0.41 1.77 16 35 H 0.39 3.14 9.06 45.56 0.41 3.55 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -35.93 319.86 -5.96 -41.89 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.50 Total: -0.02 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.80 Total: -1.57 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -2.20 Total: -35.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.93 -5.96 -41.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815234004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.378 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds