Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99613 * 2 1 4 4 H 1.48501 * 109.47115 * 269.99815 * 3 2 1 5 5 H 1.48493 * 109.47439 * 30.00353 * 3 2 1 6 6 H 1.48509 * 109.46696 * 150.00236 * 3 2 1 7 7 C 1.38754 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 O 1.34912 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00182 * 180.02562 * 9 7 2 11 11 O 1.21217 * 119.99365 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00627 * 179.97438 * 10 9 7 13 13 C 1.50696 * 112.84980 * 309.67222 * 12 10 9 14 14 C 1.38412 * 120.03046 * 90.82423 * 13 12 10 15 15 F 1.35104 * 120.01474 * 359.95648 * 14 13 12 16 16 C 1.38474 * 119.97772 * 179.97438 * 14 13 12 17 17 C 1.38207 * 120.02475 * 0.02562 * 16 14 13 18 18 C 1.38212 * 120.04853 * 0.25173 * 17 16 14 19 19 C 1.38423 * 120.02046 * 270.80457 * 13 12 10 20 20 F 1.35102 * 120.01302 * 0.04195 * 19 13 12 21 21 C 1.53787 * 113.61095 * 80.86026 * 12 10 9 22 22 C 1.53952 * 87.01944 * 89.23099 * 21 12 10 23 23 C 1.53773 * 113.61619 * 178.46650 * 12 10 9 24 24 H 0.97002 * 120.00231 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.98704 * 180.02562 * 16 14 13 26 26 H 1.08001 * 119.98008 * 179.97438 * 17 16 14 27 27 H 1.08001 * 119.98400 * 179.72764 * 18 17 16 28 28 H 1.09002 * 113.61329 * 203.75423 * 21 12 10 29 29 H 1.08997 * 113.61484 * 334.65591 * 21 12 10 30 30 H 1.09000 * 113.54062 * 270.81045 * 22 21 12 31 31 H 1.09004 * 113.66931 * 139.92897 * 22 21 12 32 32 H 1.08996 * 113.61668 * 25.35384 * 23 12 10 33 33 H 1.09002 * 113.61167 * 156.25541 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4402 0.7000 7 6 2.0081 -1.2017 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3700 0.0005 10 6 2.0651 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0020 12 6 1.3810 -4.8393 0.0023 13 6 0.3250 -4.9575 1.0708 14 6 -0.9853 -4.6099 0.7913 15 9 -1.3181 -4.1634 -0.4396 16 6 -1.9548 -4.7195 1.7739 17 6 -1.6145 -5.1753 3.0335 18 6 -0.3054 -5.5173 3.3154 19 6 0.6646 -5.4144 2.3326 20 9 1.9433 -5.7536 2.6070 21 6 0.9025 -5.2875 -1.3889 22 6 2.2873 -5.9359 -1.5678 23 6 2.3564 -6.0276 -0.0342 24 1 -0.4850 0.8400 0.0004 25 1 -2.9773 -4.4486 1.5558 26 1 -2.3713 -5.2601 3.7994 27 1 -0.0398 -5.8692 4.3013 28 1 0.0842 -6.0069 -1.3583 29 1 0.7149 -4.4604 -2.0735 30 1 3.0300 -5.2645 -1.9989 31 1 2.2554 -6.9068 -2.0623 32 1 3.3407 -5.7971 0.3731 33 1 1.9362 -6.9497 0.3674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817254621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -118.034996 kcal Electronic energy + Delta-G solvation = -22898.248668 eV Core-core repulsion = 19140.416621 eV Total energy + Delta-G solvation = -3757.832047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.72703 -48.52661 -40.13861 -38.37318 -37.33025 -34.84953 -32.13924 -31.15767 -30.07228 -26.59874 -25.53478 -24.92705 -22.42260 -22.28891 -21.26216 -18.63180 -17.94378 -17.65875 -16.83221 -16.78209 -15.68648 -15.60355 -15.26369 -15.07266 -14.86089 -14.73745 -14.36214 -14.05307 -13.84504 -13.58009 -12.51978 -12.46430 -12.12650 -12.01673 -11.87798 -11.72645 -11.53906 -11.43147 -11.16041 -10.61018 -10.47025 -10.36850 -10.19133 -10.00554 -9.74769 -9.23517 -8.55539 -8.51606 -8.43751 -6.38564 -4.06310 1.16658 1.21382 3.10258 3.19352 3.25311 3.42365 3.56683 3.93295 4.18813 4.43440 4.62914 4.68552 4.71941 4.86797 4.96226 5.06903 5.16926 5.28260 5.32613 5.57599 5.89395 5.91621 6.00546 6.10017 6.15036 6.20388 6.25046 6.30358 6.39176 6.44373 6.55714 6.88712 6.97675 7.41113 7.96579 8.71160 9.09400 9.88383 10.78740 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.007355 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.086770 B = 3806.237261 C = 4347.963152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.383 4.383 8 H 0.095 0.905 9 O -0.202 6.202 10 C 0.422 3.578 11 O -0.546 6.546 12 C -0.030 4.030 13 C -0.134 4.134 14 C 0.161 3.839 15 F -0.116 7.116 16 C -0.168 4.168 17 C -0.067 4.067 18 C -0.172 4.172 19 C 0.136 3.864 20 F -0.127 7.127 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.110 4.110 24 H 0.269 0.731 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -12.080 3.330 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.160 4.160 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.108 6.108 10 C 0.268 3.732 11 O -0.443 6.443 12 C -0.031 4.031 13 C -0.136 4.136 14 C 0.141 3.859 15 F -0.094 7.094 16 C -0.187 4.187 17 C -0.085 4.085 18 C -0.191 4.191 19 C 0.117 3.883 20 F -0.105 7.105 21 C -0.153 4.153 22 C -0.177 4.177 23 C -0.147 4.147 24 H 0.079 0.921 25 H 0.159 0.841 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.441 -11.871 3.289 13.094 hybrid contribution 0.507 1.018 -0.049 1.139 sum -3.934 -10.852 3.239 11.989 Atomic orbital electron populations 1.70010 1.05919 1.27563 1.46139 1.25317 0.95801 0.98739 0.96193 0.85712 0.79110 0.79867 0.78754 1.19847 1.20305 1.19096 1.21241 0.92363 0.79863 1.52472 0.88759 1.83881 1.39030 1.13017 1.74915 1.22089 0.86088 0.86038 0.78982 1.90542 1.15229 1.87516 1.50970 1.20223 0.94793 0.92995 0.95086 1.19570 0.94132 1.04872 0.95062 1.17132 0.91769 0.95605 0.81377 1.91572 1.92578 1.85946 1.39306 1.21170 0.99993 1.04261 0.93229 1.20753 0.95508 0.96310 0.95895 1.21083 0.92941 1.05758 0.99353 1.17185 0.79400 0.99046 0.92676 1.91525 1.35610 1.89469 1.93900 1.22987 0.97467 1.00732 0.94120 1.22890 0.97482 1.00957 0.96342 1.22873 0.99905 0.95089 0.96864 0.92134 0.84110 0.84252 0.84321 0.89351 0.89997 0.89448 0.91131 0.89420 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 2 C 0.04 1.26 5.49 -17.53 -0.10 1.17 16 3 Si 0.94 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.38 -11.65 9.64 30.92 0.30 -11.36 16 8 H 0.09 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.20 -6.00 9.60 -20.69 -0.20 -6.19 16 10 C 0.42 11.04 6.68 36.00 0.24 11.28 16 11 O -0.55 -15.25 15.07 -19.06 -0.29 -15.54 16 12 C -0.03 -0.60 0.86 -156.00 -0.13 -0.74 16 13 C -0.13 -2.54 4.71 -104.49 -0.49 -3.03 16 14 C 0.16 2.91 6.97 -39.43 -0.27 2.64 16 15 F -0.12 -2.29 15.15 2.25 0.03 -2.26 16 16 C -0.17 -2.42 10.02 -39.51 -0.40 -2.81 16 17 C -0.07 -0.81 10.04 -39.60 -0.40 -1.21 16 18 C -0.17 -2.33 10.03 -39.50 -0.40 -2.73 16 19 C 0.14 2.33 6.99 -39.43 -0.28 2.05 16 20 F -0.13 -2.24 15.28 2.25 0.03 -2.21 16 21 C -0.12 -2.02 5.42 -25.83 -0.14 -2.16 16 22 C -0.14 -2.22 7.76 -25.83 -0.20 -2.42 16 23 C -0.11 -1.89 5.25 -25.92 -0.14 -2.03 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 26 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.09 1.32 7.78 -51.93 -0.40 0.92 16 29 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.65 7.41 -51.93 -0.38 1.26 16 33 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -34.11 296.29 -5.84 -39.96 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.23 Total: 1.16 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.40 Total: -11.34 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.76 Total: -24.77 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.49 Total: -21.73 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.46 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.11 -5.84 -39.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817254621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.075 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds