Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99613 * 2 1 4 4 H 1.48501 * 109.47115 * 269.99815 * 3 2 1 5 5 H 1.48493 * 109.47439 * 30.00353 * 3 2 1 6 6 H 1.48509 * 109.46696 * 150.00236 * 3 2 1 7 7 C 1.38754 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 O 1.34912 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00182 * 180.02562 * 9 7 2 11 11 O 1.21217 * 119.99365 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00627 * 179.97438 * 10 9 7 13 13 C 1.50696 * 112.84980 * 309.67222 * 12 10 9 14 14 C 1.38412 * 120.03046 * 90.82423 * 13 12 10 15 15 F 1.35104 * 120.01474 * 359.95648 * 14 13 12 16 16 C 1.38474 * 119.97772 * 179.97438 * 14 13 12 17 17 C 1.38207 * 120.02475 * 0.02562 * 16 14 13 18 18 C 1.38212 * 120.04853 * 0.25173 * 17 16 14 19 19 C 1.38423 * 120.02046 * 270.80457 * 13 12 10 20 20 F 1.35102 * 120.01302 * 0.04195 * 19 13 12 21 21 C 1.53787 * 113.61095 * 80.86026 * 12 10 9 22 22 C 1.53952 * 87.01944 * 89.23099 * 21 12 10 23 23 C 1.53773 * 113.61619 * 178.46650 * 12 10 9 24 24 H 0.97002 * 120.00231 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.98704 * 180.02562 * 16 14 13 26 26 H 1.08001 * 119.98008 * 179.97438 * 17 16 14 27 27 H 1.08001 * 119.98400 * 179.72764 * 18 17 16 28 28 H 1.09002 * 113.61329 * 203.75423 * 21 12 10 29 29 H 1.08997 * 113.61484 * 334.65591 * 21 12 10 30 30 H 1.09000 * 113.54062 * 270.81045 * 22 21 12 31 31 H 1.09004 * 113.66931 * 139.92897 * 22 21 12 32 32 H 1.08996 * 113.61668 * 25.35384 * 23 12 10 33 33 H 1.09002 * 113.61167 * 156.25541 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4402 0.7000 7 6 2.0081 -1.2017 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3700 0.0005 10 6 2.0651 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0020 12 6 1.3810 -4.8393 0.0023 13 6 0.3250 -4.9575 1.0708 14 6 -0.9853 -4.6099 0.7913 15 9 -1.3181 -4.1634 -0.4396 16 6 -1.9548 -4.7195 1.7739 17 6 -1.6145 -5.1753 3.0335 18 6 -0.3054 -5.5173 3.3154 19 6 0.6646 -5.4144 2.3326 20 9 1.9433 -5.7536 2.6070 21 6 0.9025 -5.2875 -1.3889 22 6 2.2873 -5.9359 -1.5678 23 6 2.3564 -6.0276 -0.0342 24 1 -0.4850 0.8400 0.0004 25 1 -2.9773 -4.4486 1.5558 26 1 -2.3713 -5.2601 3.7994 27 1 -0.0398 -5.8692 4.3013 28 1 0.0842 -6.0069 -1.3583 29 1 0.7149 -4.4604 -2.0735 30 1 3.0300 -5.2645 -1.9989 31 1 2.2554 -6.9068 -2.0623 32 1 3.3407 -5.7971 0.3731 33 1 1.9362 -6.9497 0.3674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817254621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -138.291594 kcal Electronic energy + Delta-G solvation = -22899.127060 eV Core-core repulsion = 19140.416621 eV Total energy + Delta-G solvation = -3758.710439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.02923 -49.92077 -41.86429 -39.92277 -38.87113 -36.97822 -34.35791 -32.40751 -31.23939 -28.40173 -26.96424 -26.77540 -23.83159 -23.63771 -22.76716 -20.38397 -19.91769 -19.25764 -18.38464 -18.08661 -17.34149 -17.09831 -16.73438 -16.55054 -16.40682 -16.27007 -16.22974 -15.55441 -15.30422 -15.20644 -14.30460 -13.74053 -13.68595 -13.52204 -13.39155 -13.12689 -13.05428 -12.89430 -12.66882 -12.44059 -12.21578 -12.11257 -11.96528 -11.54127 -11.42458 -11.14587 -10.73763 -9.83646 -9.70059 -8.57763 -6.38685 -0.04343 0.02053 1.21926 1.28799 1.46065 1.53812 2.03840 2.35021 2.66442 2.90056 2.97704 3.23145 3.37831 3.46045 3.48942 3.71201 3.90063 4.04629 4.18599 4.26271 4.58623 4.62792 4.70402 4.82598 4.86598 4.91551 4.96251 4.98567 5.06583 5.08879 5.09234 5.20411 5.36470 5.77189 5.81747 6.55833 6.85462 7.70752 8.62062 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.007355 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.086770 B = 3806.237261 C = 4347.963152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.001 3.999 3 Si 1.015 2.985 4 H -0.259 1.259 5 H -0.255 1.255 6 H -0.265 1.265 7 C -0.428 4.428 8 H 0.077 0.923 9 O -0.229 6.229 10 C 0.418 3.582 11 O -0.575 6.575 12 C -0.043 4.043 13 C -0.163 4.163 14 C 0.127 3.873 15 F -0.137 7.137 16 C -0.164 4.164 17 C -0.047 4.047 18 C -0.159 4.159 19 C 0.112 3.888 20 F -0.138 7.138 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.099 4.099 24 H 0.279 0.721 25 H 0.166 0.834 26 H 0.192 0.808 27 H 0.174 0.826 28 H 0.119 0.881 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -12.862 4.840 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.200 4.200 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.179 1.179 6 H -0.190 1.190 7 C -0.503 4.503 8 H 0.095 0.905 9 O -0.136 6.136 10 C 0.265 3.735 11 O -0.473 6.473 12 C -0.044 4.044 13 C -0.165 4.165 14 C 0.107 3.893 15 F -0.115 7.115 16 C -0.182 4.182 17 C -0.064 4.064 18 C -0.178 4.178 19 C 0.093 3.907 20 F -0.116 7.116 21 C -0.145 4.145 22 C -0.166 4.166 23 C -0.136 4.136 24 H 0.089 0.911 25 H 0.183 0.817 26 H 0.209 0.791 27 H 0.192 0.808 28 H 0.137 0.863 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.083 0.917 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.930 -12.678 4.794 14.794 hybrid contribution 0.912 1.186 -0.443 1.561 sum -5.018 -11.492 4.350 13.273 Atomic orbital electron populations 1.70092 1.07522 1.29361 1.46057 1.26522 0.96917 1.02122 0.94478 0.84676 0.77718 0.74595 0.79657 1.18320 1.17919 1.18977 1.21435 0.92060 0.81314 1.55524 0.90493 1.83911 1.39884 1.13820 1.76002 1.23389 0.86162 0.87364 0.76567 1.90490 1.16729 1.88285 1.51844 1.20347 0.96315 0.90099 0.97677 1.19592 0.94077 1.07257 0.95597 1.17595 0.92634 0.97311 0.81713 1.91511 1.92705 1.86567 1.40752 1.21602 1.00374 1.03113 0.93139 1.21371 0.95986 0.93237 0.95811 1.21573 0.92580 1.03836 0.99773 1.17565 0.79807 1.00267 0.93053 1.91493 1.36512 1.89712 1.93901 1.23014 0.99288 1.00449 0.91753 1.22848 0.95576 1.02376 0.95837 1.22904 0.98084 0.94962 0.97664 0.91111 0.81668 0.79110 0.80826 0.86324 0.92716 0.91999 0.86719 0.91704 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.11 13.67 21.62 0.30 -53.81 16 2 C 0.00 0.04 5.49 84.87 0.47 0.51 16 3 Si 1.02 44.92 29.55 68.60 2.03 46.95 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.43 -27.37 9.64 67.94 0.66 -26.72 16 8 H 0.08 5.03 6.86 -2.91 -0.02 5.01 16 9 O -0.23 -14.40 9.60 14.92 0.14 -14.25 16 10 C 0.42 23.17 6.68 71.24 0.48 23.64 16 11 O -0.58 -34.28 15.07 20.75 0.31 -33.97 16 12 C -0.04 -1.81 0.86 -53.15 -0.05 -1.86 16 13 C -0.16 -6.22 4.71 -19.78 -0.09 -6.31 16 14 C 0.13 4.58 6.97 22.37 0.16 4.73 16 15 F -0.14 -5.59 15.15 44.97 0.68 -4.91 16 16 C -0.16 -4.31 10.02 22.32 0.22 -4.09 16 17 C -0.05 -0.93 10.04 22.26 0.22 -0.71 16 18 C -0.16 -3.76 10.03 22.32 0.22 -3.54 16 19 C 0.11 3.73 6.99 22.37 0.16 3.89 16 20 F -0.14 -4.85 15.28 44.97 0.69 -4.16 16 21 C -0.11 -3.84 5.42 31.18 0.17 -3.67 16 22 C -0.13 -4.10 7.76 31.18 0.24 -3.86 16 23 C -0.10 -3.42 5.25 31.12 0.16 -3.25 16 24 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 26 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 28 H 0.12 3.46 7.78 -2.39 -0.02 3.45 16 29 H 0.05 2.21 8.09 -2.39 -0.02 2.19 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.06 2.52 7.41 -2.39 -0.02 2.51 16 33 H 0.12 3.26 7.89 -2.39 -0.02 3.24 16 Total: -1.00 -80.41 296.29 8.31 -72.10 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.15 Total: 13.29 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 3.02 Total: -21.23 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.30 Total: -53.81 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: 0.46 Total: -48.22 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 1.37 Total: -9.07 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -80.41 8.31 -72.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817254621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.195 kcal (2) G-P(sol) polarization free energy of solvation -80.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds