Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48506 * 109.46977 * 270.00186 * 3 2 1 5 5 H 1.48500 * 109.47071 * 29.99832 * 3 2 1 6 6 H 1.48493 * 109.47437 * 150.00252 * 3 2 1 7 7 C 1.37871 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00253 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00341 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.52533 * 60.07336 * 9 7 2 11 11 C 1.53039 * 109.50064 * 180.16142 * 9 7 2 12 12 C 1.53040 * 109.53786 * 181.31502 * 11 9 7 13 13 C 1.53192 * 109.31299 * 298.63231 * 12 11 9 14 14 N 1.46927 * 108.77612 * 54.63551 * 13 12 11 15 15 C 1.34772 * 120.63033 * 126.66583 * 14 13 12 16 16 O 1.21596 * 120.00060 * 174.68037 * 15 14 13 17 17 N 1.34777 * 120.00072 * 354.67491 * 15 14 13 18 18 C 1.40163 * 120.00025 * 185.75871 * 17 15 14 19 19 C 1.38326 * 123.72679 * 7.61174 * 18 17 15 20 20 N 1.29968 * 115.36295 * 179.97438 * 19 18 17 21 21 S 1.56237 * 108.99022 * 0.02562 * 20 19 18 22 22 N 1.31251 * 123.72621 * 187.31755 * 18 17 15 23 23 C 1.46929 * 118.73614 * 306.39269 * 14 13 12 24 24 H 0.96998 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.45681 * 301.33222 * 11 9 7 26 26 H 1.09001 * 109.46271 * 61.29440 * 11 9 7 27 27 H 1.09006 * 109.49996 * 58.58378 * 12 11 9 28 28 H 1.09004 * 109.49760 * 178.64732 * 12 11 9 29 29 H 1.09002 * 109.58707 * 294.84897 * 13 12 11 30 30 H 1.09004 * 109.59021 * 174.42460 * 13 12 11 31 31 H 0.97000 * 120.00049 * 5.76823 * 17 15 14 32 32 H 1.07998 * 122.32057 * 359.97438 * 19 18 17 33 33 H 1.09003 * 109.58234 * 173.39451 * 23 14 13 34 34 H 1.08995 * 109.58378 * 293.67553 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8755 -0.6820 0.8908 11 6 4.0224 -2.6365 -0.0048 12 6 5.5524 -2.6378 0.0289 13 6 6.0873 -1.9313 -1.2207 14 7 5.4866 -0.5929 -1.3009 15 6 6.2629 0.5019 -1.4245 16 8 5.7528 1.5937 -1.5870 17 7 7.6045 0.3866 -1.3677 18 6 8.4075 1.5354 -1.3748 19 6 7.9081 2.8222 -1.2852 20 7 8.7992 3.7680 -1.3064 21 16 10.2183 3.1267 -1.4328 22 7 9.7169 1.5086 -1.4615 23 6 4.0232 -0.4711 -1.2500 24 1 -0.4850 0.8400 -0.0004 25 1 3.6395 -3.1603 0.8711 26 1 3.6787 -3.1405 -0.9081 27 1 5.8972 -2.1123 0.9195 28 1 5.9151 -3.6655 0.0497 29 1 5.8199 -2.5056 -2.1078 30 1 7.1716 -1.8418 -1.1541 31 1 8.0143 -0.4914 -1.3222 32 1 6.8508 3.0268 -1.2032 33 1 3.7457 0.5819 -1.2025 34 1 3.5877 -0.9240 -2.1406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823357014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = 49.727291 kcal Electronic energy + Delta-G solvation = -20302.117419 eV Core-core repulsion = 17169.985980 eV Total energy + Delta-G solvation = -3132.131439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.28051 -39.67331 -37.38267 -35.17116 -33.56914 -32.43810 -32.01730 -30.59707 -26.25840 -25.40207 -24.82881 -22.27677 -21.93122 -20.55016 -19.54598 -18.61553 -18.13633 -17.00227 -16.67623 -16.04582 -15.84022 -15.05111 -14.84594 -14.31460 -14.17109 -14.00015 -13.26115 -13.04905 -12.79641 -12.41503 -12.32085 -11.77770 -11.50425 -11.20393 -11.17904 -10.97175 -10.75452 -10.54742 -10.23413 -10.18587 -10.06465 -9.84458 -9.38466 -9.21977 -8.74000 -8.59744 -8.22093 -6.17586 -4.20093 0.44631 0.99580 1.61727 2.05416 2.65840 3.15419 3.31957 3.39811 3.48152 3.65013 4.34791 4.35888 4.84076 5.01339 5.12594 5.14465 5.28672 5.61179 5.69071 5.81009 5.91929 5.97326 6.01980 6.22382 6.27338 6.38382 6.47532 6.56989 6.64378 6.90379 7.05398 7.31929 7.61990 7.75267 8.32871 8.42057 8.85477 9.43046 10.94281 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.005371 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.852116 B = 5211.777190 C = 6217.076192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.004 3.996 10 H 0.032 0.968 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.110 3.890 14 N -0.607 5.607 15 C 0.708 3.292 16 O -0.568 6.568 17 N -0.643 5.643 18 C 0.339 3.661 19 C 0.031 3.969 20 N -0.506 5.506 21 S 0.502 5.498 22 N -0.535 5.535 23 C 0.116 3.884 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.418 0.582 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.496 -1.251 -2.744 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.097 0.903 9 C -0.015 4.015 10 H 0.050 0.950 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.014 4.014 14 N -0.342 5.342 15 C 0.408 3.592 16 O -0.444 6.444 17 N -0.299 5.299 18 C 0.068 3.932 19 C -0.174 4.174 20 N -0.342 5.342 21 S 0.541 5.459 22 N -0.377 5.377 23 C -0.004 4.004 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.258 0.742 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.830 0.416 -2.948 20.052 hybrid contribution -0.981 -0.132 0.047 0.991 sum 18.849 0.284 -2.901 19.073 Atomic orbital electron populations 1.69879 1.06303 1.27283 1.49546 1.25054 0.94771 0.99115 0.93999 0.87021 0.79716 0.83523 0.79095 1.19621 1.22154 1.18871 1.20928 0.87994 0.94716 1.51972 0.90329 1.19524 0.96960 0.92239 0.92825 0.94979 1.21445 0.91717 0.98835 1.01855 1.22004 0.98858 0.99688 0.96972 1.21738 0.96149 0.83520 0.99961 1.47778 1.08313 1.04118 1.74000 1.15780 0.79639 0.85452 0.78289 1.90768 1.72018 1.25156 1.56482 1.42361 1.04744 1.06860 1.75958 1.19570 0.87238 0.89147 0.97252 1.24499 1.04174 0.85704 1.03050 1.72350 1.05855 1.36594 1.19424 1.82237 1.13284 0.89430 1.60956 1.76584 1.11480 1.20321 1.29302 1.22766 0.73158 1.02942 1.01537 0.92383 0.91949 0.92274 0.91809 0.91246 0.90572 0.91582 0.74216 0.75287 0.90014 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 3 Si 0.88 22.03 24.31 -169.99 -4.13 17.90 16 4 H -0.27 -6.80 6.92 56.52 0.39 -6.41 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 7 C -0.52 -13.61 9.15 -34.44 -0.31 -13.92 16 8 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 9 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 10 H 0.03 0.74 7.21 -51.93 -0.37 0.36 16 11 C -0.10 -1.70 5.11 -26.69 -0.14 -1.84 16 12 C -0.14 -1.73 6.08 -26.61 -0.16 -1.90 16 13 C 0.11 1.30 6.43 -3.71 -0.02 1.27 16 14 N -0.61 -9.98 2.97 -178.49 -0.53 -10.51 16 15 C 0.71 11.93 8.23 -86.92 -0.72 11.22 16 16 O -0.57 -11.42 12.70 5.28 0.07 -11.36 16 17 N -0.64 -8.66 5.36 -18.42 -0.10 -8.76 16 18 C 0.34 4.86 7.79 -155.14 -1.21 3.66 16 19 C 0.03 0.47 10.25 -18.31 -0.19 0.29 16 20 N -0.51 -7.33 11.40 19.78 0.23 -7.10 16 21 S 0.50 5.85 24.22 -107.50 -2.60 3.25 16 22 N -0.53 -7.11 12.22 29.05 0.35 -6.75 16 23 C 0.12 2.37 5.09 -3.71 -0.02 2.35 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.57 5.57 -51.93 -0.29 0.29 16 31 H 0.42 4.36 6.29 -40.82 -0.26 4.10 16 32 H 0.23 3.91 5.41 -52.49 -0.28 3.62 16 33 H 0.08 1.90 2.35 -51.93 -0.12 1.78 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 285.08 15.07 4.30 4.30 Total: -1.00 -30.85 285.08 -8.14 -38.99 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.46 Total: 2.75 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.03 Total: 3.01 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.72 Total: -58.83 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.13 Total: 17.90 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -2.60 Total: 3.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.85 -8.14 -38.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823357014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.721 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds