Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00108 * 2 1 4 4 H 1.48492 * 109.47229 * 274.94472 * 3 2 1 5 5 H 1.48505 * 109.47010 * 34.94821 * 3 2 1 6 6 H 1.48501 * 109.46947 * 154.94393 * 3 2 1 7 7 C 1.37881 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99597 * 5.03829 * 7 2 1 9 9 C 1.50695 * 120.00001 * 184.76604 * 7 2 1 10 10 H 1.08998 * 109.50136 * 325.44618 * 9 7 2 11 11 C 1.53044 * 109.49707 * 205.38571 * 9 7 2 12 12 C 1.53036 * 109.53929 * 178.68459 * 11 9 7 13 13 C 1.53190 * 109.31515 * 61.36478 * 12 11 9 14 14 N 1.46929 * 108.77416 * 305.36579 * 13 12 11 15 15 C 1.34775 * 120.63042 * 233.61025 * 14 13 12 16 16 O 1.21587 * 120.00228 * 185.05742 * 15 14 13 17 17 N 1.34775 * 119.99928 * 5.05672 * 15 14 13 18 18 C 1.40164 * 120.00204 * 174.84788 * 17 15 14 19 19 C 1.38325 * 123.73008 * 185.03660 * 18 17 15 20 20 N 1.29974 * 115.36363 * 179.97438 * 19 18 17 21 21 S 1.56243 * 108.98950 * 359.97438 * 20 19 18 22 22 N 1.31254 * 123.72666 * 4.74074 * 18 17 15 23 23 C 1.46931 * 118.76421 * 53.58590 * 14 13 12 24 24 H 0.97001 * 119.99846 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.45816 * 298.70153 * 11 9 7 26 26 H 1.09001 * 109.45971 * 58.67507 * 11 9 7 27 27 H 1.09004 * 109.49671 * 181.31230 * 12 11 9 28 28 H 1.08994 * 109.49651 * 301.41152 * 12 11 9 29 29 H 1.09003 * 109.59042 * 65.15164 * 13 12 11 30 30 H 1.09003 * 109.58914 * 185.58006 * 13 12 11 31 31 H 0.97004 * 120.00402 * 354.84023 * 17 15 14 32 32 H 1.07997 * 122.32212 * 359.94571 * 19 18 17 33 33 H 1.09007 * 109.61614 * 186.64381 * 23 14 13 34 34 H 1.08999 * 109.56215 * 66.21639 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3921 2.1068 -1.3948 5 1 1.5027 2.6203 0.8020 6 1 3.5950 1.4122 0.5929 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1275 -0.0831 9 6 3.5076 -1.1963 0.1079 10 1 3.9111 -0.3269 -0.4111 11 6 4.0635 -2.4733 -0.5264 12 6 5.5917 -2.4613 -0.4461 13 6 6.0216 -2.4248 1.0238 14 7 5.3740 -1.2795 1.6776 15 6 6.1054 -0.3691 2.3504 16 8 5.5514 0.5225 2.9640 17 7 7.4508 -0.4469 2.3429 18 6 8.2145 0.5590 2.9508 19 6 9.5959 0.6098 2.9024 20 7 10.1381 1.6153 3.5225 21 16 9.0095 2.4906 4.1558 22 7 7.6974 1.5600 3.6243 23 6 3.9138 -1.1447 1.5840 24 1 -0.4850 0.8401 0.0004 25 1 3.6787 -3.3417 0.0084 26 1 3.7553 -2.5240 -1.5707 27 1 5.9880 -3.3600 -0.9188 28 1 5.9761 -1.5800 -0.9595 29 1 5.7162 -3.3477 1.5169 30 1 7.1045 -2.3163 1.0853 31 1 7.8909 -1.1991 1.9169 32 1 10.1834 -0.1346 2.3857 33 1 3.6059 -0.1918 2.0147 34 1 3.4365 -1.9630 2.1232 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823357015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = 46.179207 kcal Electronic energy + Delta-G solvation = -20128.579290 eV Core-core repulsion = 16996.293994 eV Total energy + Delta-G solvation = -3132.285296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05341 -39.62053 -37.20572 -34.86372 -33.51011 -32.40173 -31.72419 -30.51332 -26.68252 -25.31543 -24.60876 -22.02665 -21.69126 -20.43251 -19.64243 -18.68116 -17.65821 -17.03112 -16.73877 -15.97026 -15.54317 -14.96941 -14.80541 -14.28019 -13.98628 -13.85157 -13.15561 -12.87931 -12.63232 -12.37852 -12.30983 -11.61515 -11.39310 -11.24730 -11.12720 -10.82370 -10.64451 -10.64046 -10.17043 -10.15055 -9.81737 -9.68096 -9.41589 -9.19757 -8.63114 -8.57071 -8.09745 -6.14167 -4.15632 0.50319 1.17650 1.52266 2.02404 2.67928 3.30664 3.42632 3.44206 3.51947 3.81629 4.29606 4.41538 4.83863 4.95410 5.16626 5.20763 5.28893 5.38955 5.69390 5.84911 5.96972 6.07006 6.16359 6.24976 6.35277 6.53861 6.58970 6.67827 6.79516 7.04982 7.22927 7.33610 7.69598 7.96210 8.44204 8.67453 8.90879 9.49040 10.97922 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.005199 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.247502 B = 5384.532929 C = 6301.609228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.867 3.133 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.516 4.516 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.113 3.887 14 N -0.617 5.617 15 C 0.692 3.308 16 O -0.534 6.534 17 N -0.648 5.648 18 C 0.326 3.674 19 C 0.013 3.987 20 N -0.509 5.509 21 S 0.505 5.495 22 N -0.464 5.464 23 C 0.128 3.872 24 H 0.265 0.735 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.416 0.584 32 H 0.200 0.800 33 H 0.084 0.916 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.255 -3.187 3.460 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.015 4.015 10 H 0.052 0.948 11 C -0.141 4.141 12 C -0.176 4.176 13 C -0.011 4.011 14 N -0.354 5.354 15 C 0.393 3.607 16 O -0.405 6.405 17 N -0.306 5.306 18 C 0.056 3.944 19 C -0.194 4.194 20 N -0.346 5.346 21 S 0.543 5.457 22 N -0.306 5.306 23 C 0.007 3.993 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.256 0.744 32 H 0.216 0.784 33 H 0.102 0.898 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.560 -0.646 5.048 20.211 hybrid contribution 0.716 -1.000 -1.277 1.773 sum 20.276 -1.646 3.771 20.690 Atomic orbital electron populations 1.69897 1.06382 1.27207 1.49513 1.25045 0.94657 0.99058 0.93796 0.86999 0.81543 0.83871 0.78224 1.20585 1.21234 1.17722 1.20889 0.88562 0.94683 1.51316 0.90576 1.19502 0.96984 0.94312 0.90673 0.94837 1.21519 0.91580 0.99654 1.01311 1.22014 0.99283 1.01578 0.94712 1.21643 0.95403 0.89523 0.94498 1.47852 1.09225 1.24531 1.53769 1.15976 0.80172 0.83456 0.81114 1.91045 1.68830 1.35349 1.45246 1.42655 1.05686 1.23719 1.58569 1.19692 0.89366 0.90468 0.94905 1.23087 0.91093 0.99969 1.05254 1.72006 1.37642 1.09975 1.14965 1.82598 0.84277 1.31536 1.47292 1.77491 1.23997 1.09798 1.19283 1.22562 0.73254 1.02664 1.00779 0.92484 0.92566 0.92065 0.91523 0.92023 0.91021 0.91978 0.74409 0.78395 0.89798 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 22.11 26.44 -169.99 -4.49 17.62 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.25 -6.51 5.79 56.52 0.33 -6.18 16 7 C -0.52 -13.82 8.87 -34.44 -0.31 -14.13 16 8 H 0.08 2.19 8.05 -52.49 -0.42 1.76 16 9 C 0.01 0.11 1.77 -91.65 -0.16 -0.05 16 10 H 0.03 0.79 5.71 -51.93 -0.30 0.49 16 11 C -0.10 -1.80 5.15 -26.69 -0.14 -1.93 16 12 C -0.14 -1.79 6.08 -26.61 -0.16 -1.95 16 13 C 0.11 1.35 6.43 -3.71 -0.02 1.33 16 14 N -0.62 -10.55 2.97 -178.49 -0.53 -11.08 16 15 C 0.69 12.54 8.26 -86.92 -0.72 11.82 16 16 O -0.53 -12.30 14.35 5.29 0.08 -12.23 16 17 N -0.65 -8.43 5.36 -18.41 -0.10 -8.53 16 18 C 0.33 4.42 7.51 -155.14 -1.16 3.26 16 19 C 0.01 0.13 11.32 -18.31 -0.21 -0.08 16 20 N -0.51 -5.90 11.40 19.79 0.23 -5.67 16 21 S 0.50 6.14 24.22 -107.50 -2.60 3.54 16 22 N -0.46 -7.65 10.19 29.05 0.30 -7.35 16 23 C 0.13 2.70 5.40 -3.71 -0.02 2.68 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.50 5.57 -51.93 -0.29 0.21 16 31 H 0.42 3.46 6.26 -40.82 -0.26 3.20 16 32 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.08 2.05 5.56 -51.92 -0.29 1.76 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -35.07 291.54 -8.68 -43.75 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.72 Total: -1.35 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.00 Total: 3.05 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.67 Total: -58.77 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.49 Total: 17.62 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -2.60 Total: 3.54 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.07 -8.68 -43.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823357015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.932 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds