Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99858 * 2 1 4 4 H 1.48496 * 109.47336 * 270.00151 * 3 2 1 5 5 H 1.48496 * 109.46989 * 30.00514 * 3 2 1 6 6 H 1.48506 * 109.46922 * 150.00392 * 3 2 1 7 7 C 1.37872 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00235 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.64392 * 298.30283 * 9 7 2 11 11 C 1.54602 * 110.72048 * 61.45232 * 9 7 2 12 12 C 1.53995 * 105.13819 * 140.49544 * 11 9 7 13 13 N 1.47910 * 107.05820 * 1.22496 * 12 11 9 14 14 C 1.46900 * 110.99871 * 214.15292 * 13 12 11 15 15 C 1.50705 * 109.46700 * 69.87770 * 14 13 12 16 16 C 1.38705 * 120.40442 * 89.99866 * 15 14 13 17 17 C 1.38565 * 118.43594 * 179.97438 * 16 15 14 18 18 C 1.38398 * 119.14885 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.63252 * 180.02562 * 18 17 16 20 20 N 1.31944 * 120.73083 * 0.02562 * 18 17 16 21 21 C 1.31904 * 121.70650 * 359.95410 * 20 18 17 22 22 C 1.48534 * 105.81937 * 334.66962 * 13 12 11 23 23 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 24 24 H 0.96702 * 113.99895 * 61.69961 * 10 9 7 25 25 H 1.09003 * 110.31021 * 21.58322 * 11 9 7 26 26 H 1.08997 * 110.39260 * 259.45161 * 11 9 7 27 27 H 1.08993 * 109.91827 * 241.87312 * 12 11 9 28 28 H 1.09005 * 109.91862 * 120.57504 * 12 11 9 29 29 H 1.08994 * 109.47225 * 309.87761 * 14 13 12 30 30 H 1.09002 * 109.46808 * 189.86888 * 14 13 12 31 31 H 1.08001 * 120.78816 * 359.95238 * 16 15 14 32 32 H 1.08000 * 120.42478 * 179.72686 * 17 16 15 33 33 H 1.08007 * 119.60881 * 180.02562 * 21 20 18 34 34 H 1.09000 * 110.66885 * 157.64000 * 22 13 12 35 35 H 1.08998 * 110.66511 * 280.77248 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4505 -2.6188 1.1771 11 6 0.3786 -2.6271 -1.2704 12 6 0.5026 -4.1017 -1.6967 13 7 1.3709 -4.7692 -0.7025 14 6 2.1900 -5.8119 -1.3348 15 6 3.2266 -5.1686 -2.2195 16 6 4.4713 -4.8292 -1.7101 17 6 5.3938 -4.2402 -2.5599 18 6 5.0450 -4.0122 -3.8797 19 17 6.1913 -3.2756 -4.9555 20 7 3.8510 -4.3485 -4.3293 21 6 2.9492 -4.9111 -3.5481 22 6 2.2239 -3.6984 -0.1263 23 1 -0.4850 0.8401 0.0004 24 1 -0.2277 -1.9348 1.2628 25 1 0.7563 -1.9731 -2.0564 26 1 -0.6597 -2.3849 -1.0439 27 1 0.9545 -4.1654 -2.6865 28 1 -0.4816 -4.5702 -1.7040 29 1 1.5523 -6.4608 -1.9349 30 1 2.6858 -6.4016 -0.5638 31 1 4.7157 -5.0193 -0.6754 32 1 6.3710 -3.9590 -2.1960 33 1 1.9823 -5.1730 -3.9518 34 1 2.6009 -3.9923 0.8534 35 1 3.0464 -3.4576 -0.7998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -31.985147 kcal Electronic energy + Delta-G solvation = -20462.762627 eV Core-core repulsion = 17292.751412 eV Total energy + Delta-G solvation = -3170.011214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.71523 -39.81319 -37.73416 -36.74858 -34.17130 -33.93740 -32.88136 -30.71613 -29.82834 -27.41443 -25.82721 -24.79512 -23.31912 -21.56232 -21.28194 -19.03590 -18.43925 -17.77906 -17.10890 -16.94422 -16.40910 -16.28685 -15.60212 -15.29493 -15.16207 -14.73077 -14.32447 -14.16191 -13.79215 -13.57642 -13.26270 -12.98711 -12.86665 -12.65327 -12.52798 -12.40591 -12.33421 -12.17983 -12.11684 -11.69703 -11.06509 -10.85066 -10.71156 -10.61101 -10.10779 -9.89812 -9.27115 -8.23109 -6.37928 -0.16666 0.12848 0.75631 1.35925 1.38723 1.47207 2.35312 2.54578 3.02106 3.22970 3.42988 3.70517 3.82616 3.88849 3.98120 4.02468 4.18806 4.24483 4.44257 4.54733 4.65878 4.75708 4.83009 4.86966 4.93688 5.07349 5.15882 5.25044 5.45441 5.49216 5.57575 5.75134 5.90291 6.16395 6.26939 6.63065 6.68042 7.33905 7.48296 8.82177 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.006573 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.848560 B = 4258.718541 C = 5494.712178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.559 4.559 8 H 0.052 0.948 9 C 0.238 3.762 10 O -0.588 6.588 11 C -0.121 4.121 12 C 0.035 3.965 13 N -0.505 5.505 14 C 0.086 3.914 15 C -0.163 4.163 16 C -0.051 4.051 17 C -0.153 4.153 18 C 0.154 3.846 19 Cl -0.036 7.036 20 N -0.505 5.505 21 C 0.116 3.884 22 C 0.055 3.945 23 H 0.268 0.732 24 H 0.370 0.630 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.070 0.930 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -10.694 -5.553 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.070 0.930 9 C 0.198 3.802 10 O -0.396 6.396 11 C -0.160 4.160 12 C -0.093 4.093 13 N -0.226 5.226 14 C -0.042 4.042 15 C -0.167 4.167 16 C -0.077 4.077 17 C -0.174 4.174 18 C -0.010 4.010 19 Cl -0.008 7.008 20 N -0.216 5.216 21 C -0.041 4.041 22 C -0.073 4.073 23 H 0.077 0.923 24 H 0.219 0.781 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.088 0.912 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.832 -11.154 -6.014 14.897 hybrid contribution 0.629 2.200 -0.178 2.295 sum 8.461 -8.953 -6.192 13.787 Atomic orbital electron populations 1.69810 1.06732 1.27991 1.50415 1.25630 0.95761 1.02042 0.93532 0.85682 0.79001 0.79672 0.78064 1.20528 1.20437 1.19423 1.21863 0.93364 0.92380 1.52124 0.93019 1.19602 0.87345 0.91384 0.81875 1.86129 1.51563 1.55823 1.46060 1.22696 1.00068 0.94093 0.99144 1.22975 0.98074 0.94070 0.94154 1.65135 1.17781 1.11450 1.28267 1.21573 0.92204 0.94241 0.96170 1.21893 0.97291 1.01254 0.96216 1.21884 0.91584 0.93280 1.00964 1.22096 1.03018 1.00717 0.91527 1.21873 0.90739 0.98312 0.90103 1.98385 1.55866 1.80414 1.66098 1.66945 1.01839 1.12405 1.40387 1.22890 0.97548 0.93632 0.90046 1.23209 0.94795 0.90419 0.98837 0.92290 0.78134 0.94840 0.93594 0.92884 0.90103 0.87463 0.87576 0.81669 0.81525 0.80641 0.91162 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.18 11.00 21.44 0.24 -48.95 16 2 C 0.03 1.65 5.28 84.65 0.45 2.10 16 3 Si 0.95 42.62 29.54 68.60 2.03 44.64 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.56 -29.91 8.15 25.60 0.21 -29.71 16 8 H 0.05 2.76 7.78 -2.91 -0.02 2.73 16 9 C 0.24 11.61 0.95 -10.33 -0.01 11.60 16 10 O -0.59 -30.76 13.09 -148.98 -1.95 -32.71 16 11 C -0.12 -5.56 5.26 31.48 0.17 -5.39 16 12 C 0.03 1.23 6.46 86.44 0.56 1.79 16 13 N -0.50 -16.94 5.54 -887.54 -4.91 -21.86 16 14 C 0.09 2.05 5.71 85.56 0.49 2.54 16 15 C -0.16 -4.08 3.95 -19.77 -0.08 -4.16 16 16 C -0.05 -1.20 7.67 22.46 0.17 -1.02 16 17 C -0.15 -3.70 9.88 22.39 0.22 -3.48 16 18 C 0.15 4.36 7.27 84.71 0.62 4.97 16 19 Cl -0.04 -0.92 29.11 -2.72 -0.08 -1.00 16 20 N -0.50 -15.41 10.34 -186.69 -1.93 -17.34 16 21 C 0.12 3.12 9.37 84.66 0.79 3.91 16 22 C 0.05 2.18 5.21 86.65 0.45 2.63 16 23 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 24 H 0.37 19.91 7.46 -74.06 -0.55 19.36 16 25 H 0.03 1.66 7.84 -2.39 -0.02 1.64 16 26 H 0.05 2.25 7.98 -2.39 -0.02 2.23 16 27 H 0.05 1.68 4.88 -2.39 -0.01 1.67 16 28 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.11 2.06 8.03 -2.39 -0.02 2.04 16 30 H 0.11 2.13 8.10 -2.39 -0.02 2.11 16 31 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.18 4.00 7.17 -2.91 -0.02 3.98 16 34 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.06 2.27 4.76 -2.39 -0.01 2.26 16 Total: -1.00 -61.13 299.82 -2.01 -63.13 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.57 Total: 28.31 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.03 Total: -14.22 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -6.61 Total: -88.15 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.95 Total: -32.71 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -61.13 -2.01 -63.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.148 kcal (2) G-P(sol) polarization free energy of solvation -61.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds