Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47159 * 240.00040 * 3 2 1 5 5 H 1.48503 * 109.46989 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47346 * 119.99876 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.89895 * 56.13869 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12 16 16 C 1.38708 * 120.40070 * 89.99659 * 15 14 13 17 17 C 1.38570 * 118.43663 * 179.97438 * 16 15 14 18 18 C 1.38389 * 119.14816 * 0.02562 * 17 16 15 19 19 Cl 1.73600 * 119.63509 * 180.02562 * 18 17 16 20 20 N 1.31951 * 120.73393 * 359.97438 * 18 17 16 21 21 C 1.31912 * 121.70182 * 359.72855 * 20 18 17 22 22 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 23 23 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 24 24 H 0.96696 * 113.99639 * 303.86461 * 10 9 7 25 25 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 26 26 H 1.09005 * 110.84788 * 324.75216 * 11 9 7 27 27 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 28 28 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 29 29 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 30 30 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 31 31 H 1.08003 * 120.77900 * 359.96517 * 16 15 14 32 32 H 1.07997 * 120.42546 * 179.97438 * 17 16 15 33 33 H 1.08002 * 119.60296 * 180.28790 * 21 20 18 34 34 H 1.09002 * 110.37464 * 94.73346 * 22 13 12 35 35 H 1.08999 * 110.37318 * 216.96123 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3514 -2.5685 -1.1088 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5740 -6.9438 1.7634 16 6 1.5780 -8.0558 0.9343 17 6 0.8666 -9.1769 1.3307 18 6 0.1801 -9.1497 2.5320 19 17 -0.7147 -10.5475 3.0411 20 7 0.1989 -8.0735 3.2952 21 6 0.8703 -6.9914 2.9512 22 6 2.2260 -3.7029 -0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2783 -1.8358 -1.1506 25 1 -0.4934 -2.2583 1.3035 26 1 1.0714 -2.3069 2.1767 27 1 -0.5822 -4.5766 1.0863 28 1 0.5352 -4.5599 2.4793 29 1 3.1988 -5.9768 0.7738 30 1 2.6664 -5.1836 2.2757 31 1 2.1227 -8.0479 0.0018 32 1 0.8475 -10.0603 0.7097 33 1 0.8662 -6.1310 3.6040 34 1 3.1047 -3.4798 0.6040 35 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -16.035650 kcal Electronic energy + Delta-G solvation = -19708.303170 eV Core-core repulsion = 16538.983578 eV Total energy + Delta-G solvation = -3169.319592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42515 -38.36462 -36.75451 -35.04371 -32.89619 -32.10144 -31.76615 -29.31731 -28.13230 -25.86251 -24.24320 -23.80415 -22.09245 -19.99768 -19.58787 -17.48005 -17.16454 -16.78817 -15.47411 -15.30773 -14.94690 -14.81686 -14.23132 -14.10527 -13.86065 -13.30688 -12.96304 -12.60986 -12.54381 -11.90735 -11.73189 -11.50073 -11.44868 -11.28610 -11.22880 -10.99784 -10.78353 -10.51004 -10.36209 -9.98379 -9.93596 -9.65858 -9.30415 -8.93302 -8.62861 -8.11169 -7.73820 -6.26788 -4.35281 0.82616 1.10260 1.70970 3.19993 3.25708 3.27840 3.52622 4.24563 4.35608 4.57821 4.71798 4.79069 4.88207 5.00138 5.07767 5.34749 5.53550 5.62576 5.73951 5.79072 5.92681 6.00520 6.06140 6.20979 6.38937 6.41201 6.59303 6.79181 6.99252 7.36195 7.40920 7.50519 7.61438 7.63301 7.77660 8.07796 8.66440 9.34161 9.56754 10.80339 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.045279 B = 0.003406 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.237565 B = 8219.316564 C = 8342.768881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.254 3.746 10 O -0.581 6.581 11 C -0.148 4.148 12 C 0.043 3.957 13 N -0.522 5.522 14 C 0.088 3.912 15 C -0.110 4.110 16 C -0.045 4.045 17 C -0.155 4.155 18 C 0.166 3.834 19 Cl -0.042 7.042 20 N -0.479 5.479 21 C 0.123 3.877 22 C 0.058 3.942 23 H 0.269 0.731 24 H 0.382 0.618 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.048 0.952 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -14.804 4.034 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.214 3.786 10 O -0.390 6.390 11 C -0.187 4.187 12 C -0.084 4.084 13 N -0.246 5.246 14 C -0.041 4.041 15 C -0.112 4.112 16 C -0.071 4.071 17 C -0.176 4.176 18 C 0.002 3.998 19 Cl -0.014 7.014 20 N -0.189 5.189 21 C -0.034 4.034 22 C -0.069 4.069 23 H 0.079 0.921 24 H 0.234 0.766 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.066 0.934 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.890 -15.664 4.352 16.366 hybrid contribution 0.740 1.797 0.180 1.952 sum 2.629 -13.867 4.532 14.823 Atomic orbital electron populations 1.69571 1.05985 1.27715 1.50349 1.25004 0.94988 0.99491 0.93592 0.86507 0.79568 0.82292 0.78767 1.20019 1.21099 1.20157 1.21529 0.93549 0.90709 1.51894 0.92049 1.19524 0.85834 0.90609 0.82679 1.86100 1.50900 1.52561 1.49465 1.23343 1.02560 0.91891 1.00931 1.22883 0.95253 0.96478 0.93797 1.63687 1.11377 1.18942 1.30569 1.21155 0.94709 0.90808 0.97433 1.20995 0.98690 0.96594 0.94969 1.21505 0.95773 0.91033 0.98819 1.21810 0.98977 1.00639 0.96129 1.21588 0.96080 0.89959 0.92201 1.98390 1.74027 1.37222 1.91727 1.66991 1.18872 0.99434 1.33637 1.22644 0.91500 0.94412 0.94868 1.23035 0.95459 0.89759 0.98623 0.92095 0.76618 0.90783 0.92553 0.91720 0.94428 0.89848 0.93467 0.83599 0.83899 0.82051 0.93380 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.52 10.80 55.43 0.60 -22.93 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.98 8.26 -34.44 -0.28 -14.26 16 8 H 0.06 1.57 7.77 -52.49 -0.41 1.16 16 9 C 0.25 6.12 0.89 -89.48 -0.08 6.04 16 10 O -0.58 -15.09 13.18 -35.23 -0.46 -15.55 16 11 C -0.15 -3.29 5.65 -24.75 -0.14 -3.43 16 12 C 0.04 0.81 6.27 -2.83 -0.02 0.80 16 13 N -0.52 -9.39 5.15 -232.68 -1.20 -10.59 16 14 C 0.09 1.22 4.77 -4.98 -0.02 1.20 16 15 C -0.11 -1.43 5.10 -104.48 -0.53 -1.96 16 16 C -0.04 -0.51 9.86 -39.29 -0.39 -0.90 16 17 C -0.15 -1.71 9.88 -39.40 -0.39 -2.10 16 18 C 0.17 2.14 7.27 -17.44 -0.13 2.02 16 19 Cl -0.04 -0.48 29.11 -51.86 -1.51 -1.99 16 20 N -0.48 -6.88 10.34 -10.36 -0.11 -6.99 16 21 C 0.12 1.65 9.89 -17.55 -0.17 1.48 16 22 C 0.06 1.19 5.85 -2.30 -0.01 1.17 16 23 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 24 H 0.38 10.15 6.93 45.56 0.32 10.47 16 25 H 0.07 1.77 7.85 -51.93 -0.41 1.36 16 26 H 0.06 1.25 8.04 -51.93 -0.42 0.84 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.04 0.61 5.49 -51.93 -0.29 0.33 16 29 H 0.08 1.03 8.03 -51.93 -0.42 0.62 16 30 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 31 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 1.97 6.93 -52.49 -0.36 1.60 16 34 H 0.05 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -27.67 305.81 -8.98 -36.65 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -3.62 Total: 9.84 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.26 Total: -8.20 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -0.71 Total: -40.50 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.46 Total: -15.55 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.67 -8.98 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.616 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds