Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47018 * 269.99662 * 3 2 1 5 5 H 1.48498 * 109.47239 * 29.99634 * 3 2 1 6 6 H 1.48501 * 109.47316 * 149.99594 * 3 2 1 7 7 C 1.37872 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00283 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99736 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.77982 * 298.19891 * 9 7 2 11 11 C 1.54590 * 110.72614 * 61.44884 * 9 7 2 12 12 C 1.53997 * 105.14015 * 140.31739 * 11 9 7 13 13 N 1.47904 * 107.05665 * 1.22176 * 12 11 9 14 14 C 1.46896 * 111.00251 * 214.15472 * 13 12 11 15 15 C 1.50702 * 109.46690 * 75.74446 * 14 13 12 16 16 C 1.38613 * 120.42174 * 265.97864 * 15 14 13 17 17 C 1.38673 * 118.43312 * 180.02562 * 16 15 14 18 18 C 1.38187 * 119.19240 * 0.02562 * 17 16 15 19 19 N 1.31875 * 120.78304 * 0.02562 * 18 17 16 20 20 C 1.31978 * 121.70433 * 359.69671 * 19 18 17 21 21 Cl 1.73603 * 119.63631 * 180.29265 * 20 19 18 22 22 C 1.48531 * 105.82050 * 334.67247 * 13 12 11 23 23 H 0.97005 * 119.99999 * 0.02562 * 1 2 3 24 24 H 0.96698 * 113.99547 * 61.79861 * 10 9 7 25 25 H 1.09003 * 110.30949 * 21.40167 * 11 9 7 26 26 H 1.09004 * 110.39523 * 259.27390 * 11 9 7 27 27 H 1.08992 * 109.91866 * 120.57650 * 12 11 9 28 28 H 1.09003 * 109.91680 * 241.87228 * 12 11 9 29 29 H 1.08997 * 109.47415 * 195.74610 * 14 13 12 30 30 H 1.09004 * 109.46836 * 315.74766 * 14 13 12 31 31 H 1.07991 * 120.78448 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.40261 * 180.02562 * 17 16 15 33 33 H 1.08007 * 119.61217 * 179.97438 * 18 17 16 34 34 H 1.08996 * 110.66774 * 280.76869 * 22 13 12 35 35 H 1.09003 * 110.80967 * 157.70633 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4502 -2.6223 1.1778 11 6 0.3795 -2.6277 -1.2698 12 6 0.5074 -4.1014 -1.6979 13 7 1.3770 -4.7679 -0.7043 14 6 2.1990 -5.8077 -1.3375 15 6 3.3228 -5.1610 -2.1056 16 6 3.1837 -4.8896 -3.4577 17 6 4.2441 -4.2942 -4.1242 18 6 5.3968 -3.9934 -3.4239 19 7 5.4956 -4.2664 -2.1375 20 6 4.5053 -4.8276 -1.4694 21 17 4.6906 -5.1564 0.2251 22 6 2.2270 -3.6957 -0.1263 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2297 -1.9401 1.2640 25 1 0.7558 -1.9717 -2.0548 26 1 -0.6596 -2.3884 -1.0434 27 1 -0.4755 -4.5723 -1.7062 28 1 0.9598 -4.1627 -2.6877 29 1 2.6127 -6.4615 -0.5698 30 1 1.5824 -6.3930 -2.0196 31 1 2.2715 -5.1368 -3.9801 32 1 4.1699 -4.0684 -5.1776 33 1 6.2270 -3.5300 -3.9363 34 1 3.0491 -3.4519 -0.7991 35 1 2.6066 -3.9880 0.8528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -3.905464 kcal Electronic energy + Delta-G solvation = -20858.895718 eV Core-core repulsion = 17690.102130 eV Total energy + Delta-G solvation = -3168.793588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56859 -38.21548 -36.45514 -35.11563 -32.63082 -32.08672 -31.56412 -29.23975 -28.08084 -25.86830 -24.31895 -23.46157 -22.10375 -20.04741 -19.47510 -17.31861 -17.05957 -16.68224 -15.64458 -15.27162 -14.91293 -14.70222 -14.10827 -13.96154 -13.58424 -13.38191 -13.09025 -12.46275 -12.09890 -12.05859 -11.64828 -11.43485 -11.34049 -11.26646 -10.96870 -10.69865 -10.56345 -10.38664 -10.30581 -9.81286 -9.73225 -9.61181 -9.10014 -8.73320 -8.55111 -8.08089 -7.77403 -6.18223 -4.25668 0.94283 1.18008 1.98616 3.22716 3.30269 3.35705 3.65774 4.31565 4.42457 4.67184 4.74393 4.86988 4.90512 5.09965 5.20361 5.40119 5.52800 5.70715 5.87688 5.92090 5.96120 6.02747 6.14255 6.20493 6.46464 6.48517 6.63705 6.91749 7.04885 7.38296 7.51968 7.54073 7.63678 7.74885 7.84469 8.22437 8.77058 9.43060 9.58672 10.88778 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.007113 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.798482 B = 3935.299585 C = 4288.804265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.256 3.744 10 O -0.579 6.579 11 C -0.128 4.128 12 C 0.029 3.971 13 N -0.497 5.497 14 C 0.081 3.919 15 C -0.145 4.145 16 C -0.057 4.057 17 C -0.171 4.171 18 C 0.112 3.888 19 N -0.479 5.479 20 C 0.190 3.810 21 Cl -0.022 7.022 22 C 0.047 3.953 23 H 0.266 0.734 24 H 0.376 0.624 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.049 0.951 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -9.787 -8.254 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.216 3.784 10 O -0.387 6.387 11 C -0.167 4.167 12 C -0.099 4.099 13 N -0.218 5.218 14 C -0.048 4.048 15 C -0.150 4.150 16 C -0.083 4.083 17 C -0.191 4.191 18 C -0.045 4.045 19 N -0.190 5.190 20 C 0.025 3.975 21 Cl 0.007 6.993 22 C -0.080 4.080 23 H 0.076 0.924 24 H 0.225 0.775 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.067 0.933 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.980 -10.289 -7.132 13.874 hybrid contribution -0.112 1.769 -1.251 2.170 sum 5.868 -8.520 -8.383 13.315 Atomic orbital electron populations 1.69737 1.05850 1.27294 1.50546 1.24971 0.94954 0.99266 0.93844 0.86536 0.80095 0.82952 0.78130 1.20659 1.20990 1.19690 1.21584 0.93476 0.90795 1.51368 0.92354 1.19355 0.86610 0.90565 0.81918 1.86153 1.51359 1.56127 1.45071 1.22913 1.01956 0.91294 1.00521 1.23035 0.96723 0.97112 0.93050 1.65182 1.17373 1.11928 1.27312 1.21512 0.90721 0.95760 0.96836 1.21384 0.96399 1.02001 0.95225 1.21517 0.98667 0.95277 0.92866 1.22178 0.94604 1.00501 1.01818 1.22616 0.97476 0.95914 0.88521 1.67015 1.30489 1.11953 1.09504 1.21522 0.90619 0.97209 0.88157 1.98413 1.97572 1.92902 1.10417 1.23570 0.94892 0.90701 0.98861 0.92437 0.77482 0.92339 0.91461 0.91602 0.95105 0.89278 0.90058 0.84112 0.84214 0.82059 0.93301 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 11.02 55.43 0.61 -23.54 16 2 C 0.07 1.94 5.28 -17.82 -0.09 1.84 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.69 8.14 -34.44 -0.28 -14.97 16 8 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 9 C 0.26 6.49 0.95 -89.91 -0.09 6.40 16 10 O -0.58 -15.55 13.10 -35.23 -0.46 -16.01 16 11 C -0.13 -2.97 5.26 -25.38 -0.13 -3.10 16 12 C 0.03 0.54 6.44 -2.75 -0.02 0.52 16 13 N -0.50 -9.58 5.54 -231.89 -1.28 -10.86 16 14 C 0.08 1.24 5.39 -4.98 -0.03 1.21 16 15 C -0.15 -2.23 3.92 -104.44 -0.41 -2.64 16 16 C -0.06 -0.74 8.63 -39.28 -0.34 -1.08 16 17 C -0.17 -2.00 10.11 -39.44 -0.40 -2.40 16 18 C 0.11 1.46 11.18 -17.55 -0.20 1.26 16 19 N -0.48 -7.85 10.34 -10.36 -0.11 -7.96 16 20 C 0.19 3.19 5.51 -17.45 -0.10 3.09 16 21 Cl -0.02 -0.36 24.63 -51.86 -1.28 -1.64 16 22 C 0.05 1.04 3.85 -1.90 -0.01 1.03 16 23 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.38 10.12 7.48 45.56 0.34 10.46 16 25 H 0.06 1.43 7.84 -51.93 -0.41 1.02 16 26 H 0.07 1.63 7.99 -51.93 -0.41 1.22 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.03 0.52 5.64 -51.93 -0.29 0.23 16 29 H 0.09 1.32 7.10 -51.93 -0.37 0.95 16 30 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 31 H 0.14 1.50 7.45 -52.49 -0.39 1.11 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.05 1.10 4.50 -51.93 -0.23 0.87 16 35 H 0.08 1.82 6.88 -51.93 -0.36 1.46 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -29.86 293.31 -8.55 -38.41 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.35 Total: 9.87 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.09 Total: -8.81 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.78 Total: -42.36 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.46 Total: -16.01 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.28 Total: -1.64 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.86 -8.55 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.503 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds