Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47058 * 240.00121 * 3 2 1 5 5 H 1.48502 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47108 * 119.99826 * 3 2 1 7 7 C 1.37872 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00509 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.78337 * 61.79453 * 9 7 2 11 11 C 1.54598 * 110.72465 * 298.55176 * 9 7 2 12 12 C 1.53997 * 105.13678 * 219.68252 * 11 9 7 13 13 N 1.47904 * 107.05993 * 358.77159 * 12 11 9 14 14 C 1.46897 * 111.00056 * 145.84783 * 13 12 11 15 15 C 1.50701 * 109.46944 * 184.29257 * 14 13 12 16 16 C 1.38608 * 120.42709 * 105.44710 * 15 14 13 17 17 C 1.38660 * 118.43757 * 180.02562 * 16 15 14 18 18 C 1.38187 * 119.19292 * 359.97438 * 17 16 15 19 19 N 1.31877 * 120.78081 * 0.02562 * 18 17 16 20 20 C 1.31976 * 121.70726 * 359.70670 * 19 18 17 21 21 Cl 1.73602 * 119.63801 * 180.28960 * 20 19 18 22 22 C 1.48533 * 105.82112 * 25.33008 * 13 12 11 23 23 H 0.97006 * 120.00101 * 0.02562 * 1 2 3 24 24 H 0.96701 * 113.99620 * 298.20938 * 10 9 7 25 25 H 1.08996 * 110.31218 * 100.76689 * 11 9 7 26 26 H 1.08996 * 110.30324 * 338.59069 * 11 9 7 27 27 H 1.09004 * 109.91943 * 118.12471 * 12 11 9 28 28 H 1.08999 * 109.91721 * 239.22260 * 12 11 9 29 29 H 1.09003 * 109.46920 * 304.28652 * 14 13 12 30 30 H 1.09001 * 109.47363 * 64.28621 * 14 13 12 31 31 H 1.08003 * 120.78146 * 359.96988 * 16 15 14 32 32 H 1.08007 * 120.40487 * 180.02562 * 17 16 15 33 33 H 1.08000 * 119.61102 * 180.02562 * 18 17 16 34 34 H 1.09003 * 110.66465 * 79.22621 * 22 13 12 35 35 H 1.08991 * 110.66756 * 202.19113 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4501 -2.6223 -1.1777 11 6 0.3794 -2.6277 1.2699 12 6 0.5074 -4.1014 1.6979 13 7 1.3769 -4.7679 0.7043 14 6 2.1990 -5.8077 1.3374 15 6 3.1442 -6.3905 0.3186 16 6 4.4912 -6.0648 0.3436 17 6 5.3237 -6.6243 -0.6137 18 6 4.7875 -7.4826 -1.5546 19 7 3.5007 -7.7710 -1.5494 20 6 2.6793 -7.2615 -0.6507 21 17 0.9959 -7.6837 -0.6892 22 6 2.2269 -3.6958 0.1262 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2298 -1.9401 -1.2639 25 1 -0.6593 -2.3889 1.0419 26 1 0.7559 -1.9718 2.0548 27 1 0.9600 -4.1627 2.6877 28 1 -0.4760 -4.5714 1.7097 29 1 2.7713 -5.3703 2.1555 30 1 1.5531 -6.5950 1.7261 31 1 4.8830 -5.3904 1.0907 32 1 6.3786 -6.3927 -0.6234 33 1 5.4299 -7.9226 -2.3031 34 1 3.0491 -3.4520 0.7990 35 1 2.6066 -3.9912 -0.8519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -13.171251 kcal Electronic energy + Delta-G solvation = -20267.025868 eV Core-core repulsion = 17097.830486 eV Total energy + Delta-G solvation = -3169.195382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30152 -38.26128 -36.33141 -35.04622 -32.87055 -32.10915 -31.57173 -29.17681 -28.01738 -25.87096 -24.23872 -23.57095 -21.84904 -20.16581 -19.48447 -17.31229 -16.98734 -16.69442 -15.51694 -15.31585 -14.89396 -14.45072 -14.13942 -14.07792 -13.70062 -13.20854 -13.05727 -12.58298 -12.30196 -11.93124 -11.57656 -11.45018 -11.29060 -11.11752 -10.99235 -10.74588 -10.68014 -10.49183 -10.41843 -9.82360 -9.75606 -9.53788 -9.14516 -8.78469 -8.58752 -8.08077 -7.72842 -6.20544 -4.29057 0.96290 1.17457 2.08683 3.22380 3.27934 3.30311 3.64655 4.28704 4.43023 4.60744 4.78847 4.87282 4.98182 5.07776 5.19856 5.37233 5.56993 5.71213 5.78104 5.93816 5.97048 6.01067 6.15777 6.17478 6.43888 6.48232 6.60399 6.88866 7.04227 7.37801 7.51128 7.53835 7.65299 7.75050 7.82108 8.19097 8.72840 9.39913 9.58194 10.86383 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.005295 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.688903 B = 5286.734747 C = 5858.334016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.258 3.742 10 O -0.578 6.578 11 C -0.128 4.128 12 C 0.037 3.963 13 N -0.501 5.501 14 C 0.085 3.915 15 C -0.106 4.106 16 C -0.059 4.059 17 C -0.173 4.173 18 C 0.109 3.891 19 N -0.484 5.484 20 C 0.196 3.804 21 Cl -0.017 7.017 22 C 0.057 3.943 23 H 0.267 0.733 24 H 0.376 0.624 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.042 0.958 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -11.982 2.963 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.217 3.783 10 O -0.386 6.386 11 C -0.167 4.167 12 C -0.090 4.090 13 N -0.225 5.225 14 C -0.044 4.044 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.193 4.193 18 C -0.048 4.048 19 N -0.194 5.194 20 C 0.031 3.969 21 Cl 0.012 6.988 22 C -0.070 4.070 23 H 0.077 0.923 24 H 0.225 0.775 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.060 0.940 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.332 -13.255 1.846 14.805 hybrid contribution 0.850 2.384 1.378 2.882 sum 7.181 -10.871 3.224 13.422 Atomic orbital electron populations 1.69728 1.05891 1.27488 1.50134 1.24985 0.94965 0.99312 0.93782 0.86567 0.79623 0.82573 0.78701 1.20091 1.21119 1.20236 1.21549 0.93414 0.90846 1.51893 0.92346 1.19304 0.86653 0.90255 0.82075 1.86167 1.51328 1.56116 1.44976 1.22928 1.02031 0.91311 1.00435 1.22917 0.96801 0.96827 0.92484 1.64896 1.17993 1.10842 1.28752 1.21196 0.93970 0.96526 0.92702 1.20542 0.95044 0.97319 0.98013 1.21553 0.92069 0.96935 0.98010 1.22154 1.01521 0.99056 0.96535 1.22610 0.89984 0.94974 0.97223 1.67046 1.04646 1.24510 1.23245 1.21505 0.88307 0.94650 0.92422 1.98409 1.10702 1.92173 1.97538 1.23148 0.94743 0.90968 0.98167 0.92309 0.77473 0.91411 0.92086 0.95233 0.91589 0.93841 0.89665 0.84129 0.84226 0.82146 0.93964 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.02 55.43 0.61 -23.17 16 2 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.32 8.14 -34.44 -0.28 -14.60 16 8 H 0.06 1.54 7.78 -52.48 -0.41 1.13 16 9 C 0.26 6.38 0.95 -89.91 -0.09 6.29 16 10 O -0.58 -15.43 13.09 -35.23 -0.46 -15.89 16 11 C -0.13 -2.92 5.26 -25.37 -0.13 -3.05 16 12 C 0.04 0.71 6.70 -2.75 -0.02 0.69 16 13 N -0.50 -9.53 5.24 -231.89 -1.22 -10.75 16 14 C 0.08 1.30 4.33 -4.98 -0.02 1.28 16 15 C -0.11 -1.59 4.41 -104.44 -0.46 -2.05 16 16 C -0.06 -0.75 9.65 -39.29 -0.38 -1.13 16 17 C -0.17 -1.89 10.11 -39.44 -0.40 -2.28 16 18 C 0.11 1.31 11.18 -17.55 -0.20 1.12 16 19 N -0.48 -7.43 10.34 -10.36 -0.11 -7.54 16 20 C 0.20 3.14 7.27 -17.45 -0.13 3.01 16 21 Cl -0.02 -0.27 27.72 -51.86 -1.44 -1.71 16 22 C 0.06 1.22 4.74 -1.90 -0.01 1.21 16 23 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 24 H 0.38 10.09 7.48 45.56 0.34 10.43 16 25 H 0.07 1.63 7.99 -51.93 -0.41 1.22 16 26 H 0.06 1.44 7.84 -51.93 -0.41 1.03 16 27 H 0.03 0.50 7.67 -51.93 -0.40 0.10 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.61 7.82 -51.93 -0.41 0.21 16 30 H 0.09 1.22 7.61 -51.93 -0.39 0.82 16 31 H 0.14 1.51 8.04 -52.48 -0.42 1.09 16 32 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.04 0.87 7.92 -51.93 -0.41 0.45 16 35 H 0.07 1.54 7.95 -51.93 -0.41 1.13 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -29.06 306.95 -8.95 -38.00 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -3.74 Total: 8.65 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.20 Total: -7.70 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.71 Total: -41.46 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.46 Total: -15.89 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.44 Total: -1.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.06 -8.95 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.831 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds