Wall clock time and date at job start Tue Mar 31 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99373 * 3 2 1 5 5 H 1.48492 * 109.47176 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00076 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50701 * 109.47223 * 69.87126 * 14 13 12 16 16 C 1.38187 * 119.61116 * 94.72166 * 15 14 13 17 17 C 1.38675 * 119.19291 * 179.77368 * 16 15 14 18 18 C 1.38607 * 118.43165 * 0.49966 * 17 16 15 19 19 C 1.38352 * 119.15516 * 359.74812 * 18 17 16 20 20 Cl 1.73601 * 119.63410 * 179.97438 * 19 18 17 21 21 N 1.31874 * 119.60976 * 275.00470 * 15 14 13 22 22 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 23 23 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 24 24 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 25 25 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 26 26 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 27 27 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 28 28 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 29 29 H 1.08999 * 109.47147 * 189.87070 * 14 13 12 30 30 H 1.08994 * 109.46907 * 309.87190 * 14 13 12 31 31 H 1.07996 * 120.40523 * 0.02562 * 16 15 14 32 32 H 1.08001 * 120.78248 * 180.26944 * 17 16 15 33 33 H 1.08002 * 120.42181 * 179.77595 * 18 17 16 34 34 H 1.08999 * 110.37744 * 142.93014 * 22 13 12 35 35 H 1.09008 * 110.37208 * 265.26666 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 2.9076 -4.7443 -2.6418 16 6 4.2096 -4.3609 -2.3821 17 6 4.8741 -3.5591 -3.2979 18 6 4.1977 -3.1626 -4.4409 19 6 2.8929 -3.5814 -4.6313 20 17 2.0337 -3.0916 -6.0581 21 7 2.2940 -4.3486 -3.7400 22 6 2.2174 -3.7051 -0.1612 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2256 -1.9561 1.2755 25 1 0.8704 -2.1841 -2.1318 26 1 -0.6057 -2.1841 -1.1147 27 1 -0.6880 -4.5114 -1.0212 28 1 0.2900 -4.4148 -2.5122 29 1 2.9007 -6.1981 -1.0796 30 1 1.5153 -6.2979 -2.1926 31 1 4.7050 -4.6850 -1.4788 32 1 5.8934 -3.2479 -3.1228 33 1 4.6831 -2.5351 -5.1737 34 1 2.6064 -4.0121 0.8096 35 1 3.0353 -3.4480 -0.8345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:11 Heat of formation + Delta-G solvation = -9.243023 kcal Electronic energy + Delta-G solvation = -20738.072714 eV Core-core repulsion = 17569.047672 eV Total energy + Delta-G solvation = -3169.025042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48530 -38.12616 -36.53214 -34.86626 -32.54546 -32.12257 -31.65940 -29.24116 -28.04422 -25.97924 -24.28957 -23.36672 -22.05157 -19.94882 -19.47483 -17.08398 -17.07669 -16.40322 -15.76202 -15.15868 -14.97028 -14.85884 -14.08139 -13.88026 -13.64576 -13.18768 -12.85829 -12.58735 -12.10602 -11.86656 -11.59238 -11.38468 -11.25942 -11.23756 -11.04275 -10.89788 -10.71570 -10.43246 -10.26674 -9.88081 -9.78152 -9.53232 -9.16096 -8.73617 -8.58392 -8.05432 -7.66252 -6.19642 -4.27730 1.00409 1.24846 1.90571 3.20703 3.28224 3.30972 3.70529 4.28777 4.37624 4.69109 4.83634 4.99341 5.04118 5.08652 5.27625 5.47221 5.62908 5.80118 5.88227 5.96714 6.05450 6.12155 6.22506 6.28556 6.52139 6.61388 6.68992 6.89493 7.13553 7.45929 7.52552 7.61421 7.71019 7.83710 7.87168 8.17874 8.73522 9.40555 9.53590 10.87351 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.007261 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.962663 B = 3855.495847 C = 4558.451259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.253 3.747 10 O -0.580 6.580 11 C -0.137 4.137 12 C 0.033 3.967 13 N -0.510 5.510 14 C 0.095 3.905 15 C 0.125 3.875 16 C -0.156 4.156 17 C -0.062 4.062 18 C -0.160 4.160 19 C 0.179 3.821 20 Cl -0.041 7.041 21 N -0.465 5.465 22 C 0.044 3.956 23 H 0.266 0.734 24 H 0.377 0.623 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 -7.500 -8.271 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.076 0.924 9 C 0.213 3.787 10 O -0.388 6.388 11 C -0.176 4.176 12 C -0.094 4.094 13 N -0.232 5.232 14 C -0.034 4.034 15 C -0.015 4.015 16 C -0.177 4.177 17 C -0.088 4.088 18 C -0.181 4.181 19 C 0.015 3.985 20 Cl -0.012 7.012 21 N -0.177 5.177 22 C -0.083 4.083 23 H 0.076 0.924 24 H 0.226 0.774 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.510 -8.461 -8.035 13.361 hybrid contribution 1.130 2.488 -0.890 2.874 sum 7.640 -5.973 -8.925 13.180 Atomic orbital electron populations 1.69736 1.05888 1.27324 1.50232 1.24976 0.94957 0.99291 0.93755 0.86532 0.79978 0.83011 0.78136 1.20619 1.20965 1.19763 1.21480 0.93326 0.90751 1.51728 0.92405 1.19606 0.86817 0.90373 0.81945 1.86130 1.51323 1.56716 1.44594 1.23155 1.02321 0.92013 1.00120 1.22970 0.93469 0.96128 0.96836 1.63988 1.08170 1.22402 1.28639 1.21560 0.96657 0.94766 0.90441 1.22213 0.91543 0.96235 0.91493 1.22100 0.95667 0.99536 1.00393 1.21531 1.00260 0.94709 0.92286 1.21746 0.93985 1.02456 0.99935 1.21589 0.89886 0.96452 0.90619 1.98391 1.78454 1.89224 1.35142 1.66855 1.37412 1.11272 1.02133 1.23350 0.95758 0.90726 0.98435 0.92398 0.77426 0.93117 0.90746 0.91811 0.92214 0.89228 0.89399 0.84063 0.83957 0.84135 0.91137 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 10.75 55.43 0.60 -23.65 16 2 C 0.07 1.95 5.29 -17.82 -0.09 1.86 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.46 8.28 -34.44 -0.29 -14.74 16 8 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 9 C 0.25 6.37 0.88 -89.38 -0.08 6.29 16 10 O -0.58 -15.41 13.16 -35.23 -0.46 -15.88 16 11 C -0.14 -3.30 5.36 -24.91 -0.13 -3.44 16 12 C 0.03 0.69 6.43 -2.84 -0.02 0.67 16 13 N -0.51 -9.93 5.41 -232.38 -1.26 -11.19 16 14 C 0.10 1.48 5.63 -4.98 -0.03 1.45 16 15 C 0.13 2.00 4.88 -82.59 -0.40 1.59 16 16 C -0.16 -2.16 7.62 -39.44 -0.30 -2.46 16 17 C -0.06 -0.77 10.17 -39.28 -0.40 -1.17 16 18 C -0.16 -2.14 9.88 -39.40 -0.39 -2.53 16 19 C 0.18 2.82 7.27 -17.45 -0.13 2.70 16 20 Cl -0.04 -0.59 29.11 -51.86 -1.51 -2.10 16 21 N -0.46 -7.98 8.85 -6.62 -0.06 -8.03 16 22 C 0.04 0.95 5.66 -2.04 -0.01 0.94 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.38 10.09 7.56 45.56 0.34 10.44 16 25 H 0.05 1.30 8.03 -51.93 -0.42 0.89 16 26 H 0.07 1.92 7.53 -51.93 -0.39 1.53 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.20 6.15 -51.93 -0.32 0.88 16 29 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 30 H 0.09 1.29 8.04 -51.93 -0.42 0.88 16 31 H 0.14 1.64 8.04 -52.49 -0.42 1.22 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.06 1.15 4.42 -51.92 -0.23 0.92 16 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -29.33 301.81 -8.94 -38.27 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.50 Total: 11.01 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.27 Total: -8.84 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.72 Total: -42.87 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.46 Total: -15.88 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.51 Total: -2.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.33 -8.94 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.024 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds