Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00402 * 2 1 4 4 H 1.48504 * 109.46918 * 239.99668 * 3 2 1 5 5 H 1.48502 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47253 * 119.99762 * 3 2 1 7 7 C 1.37882 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00070 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.87154 * 62.39333 * 9 7 2 11 11 C 1.55141 * 110.98982 * 298.54623 * 9 7 2 12 12 C 1.54317 * 103.01731 * 206.25215 * 11 9 7 13 13 N 1.47441 * 107.23330 * 22.28724 * 12 11 9 14 14 C 1.46902 * 110.99954 * 123.25669 * 13 12 11 15 15 C 1.50695 * 109.47291 * 69.87477 * 14 13 12 16 16 C 1.38188 * 119.61027 * 94.99735 * 15 14 13 17 17 C 1.38668 * 119.19098 * 179.74626 * 16 15 14 18 18 C 1.38611 * 118.43964 * 0.25654 * 17 16 15 19 19 C 1.38358 * 119.14525 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.62996 * 179.97438 * 19 18 17 21 21 N 1.31882 * 119.60988 * 275.24721 * 15 14 13 22 22 C 1.47844 * 108.56912 * 0.98809 * 13 12 11 23 23 H 0.97003 * 119.99581 * 0.02562 * 1 2 3 24 24 H 0.96700 * 113.99984 * 297.60695 * 10 9 7 25 25 H 1.09003 * 110.70592 * 87.87396 * 11 9 7 26 26 H 1.08996 * 110.85873 * 324.70535 * 11 9 7 27 27 H 1.09003 * 109.89137 * 262.87908 * 12 11 9 28 28 H 1.09000 * 109.88476 * 141.69187 * 12 11 9 29 29 H 1.09000 * 109.47118 * 309.86742 * 14 13 12 30 30 H 1.09005 * 109.46841 * 189.87200 * 14 13 12 31 31 H 1.08002 * 120.40717 * 0.02859 * 16 15 14 32 32 H 1.07999 * 120.78098 * 180.23229 * 17 16 15 33 33 H 1.07992 * 120.42926 * 179.97438 * 18 17 16 34 34 H 1.08994 * 110.37555 * 94.73254 * 22 13 12 35 35 H 1.09004 * 110.37442 * 217.07617 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4610 -2.6309 -1.1829 11 6 0.3731 -2.6340 1.2726 12 6 0.2528 -4.1621 1.4515 13 7 1.3914 -4.7757 0.7438 14 6 2.1850 -5.6149 1.6516 15 6 1.3940 -6.8436 2.0202 16 6 1.5773 -8.0129 1.3070 17 6 0.8488 -9.1397 1.6570 18 6 -0.0448 -9.0465 2.7125 19 6 -0.1788 -7.8407 3.3775 20 17 -1.2947 -7.7097 4.7009 21 7 0.5316 -6.7887 3.0164 22 6 2.2184 -3.6986 0.1594 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2245 -1.9552 -1.2755 25 1 -0.6078 -2.1863 1.1132 26 1 0.8659 -2.1828 2.1338 27 1 -0.6847 -4.5133 1.0202 28 1 0.2942 -4.4158 2.5107 29 1 2.4218 -5.0510 2.5538 30 1 3.1091 -5.9129 1.1563 31 1 2.2826 -8.0501 0.4900 32 1 0.9744 -10.0680 1.1195 33 1 -0.6289 -9.9041 3.0120 34 1 3.0358 -3.4401 0.8324 35 1 2.6075 -4.0035 -0.8121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = -13.445941 kcal Electronic energy + Delta-G solvation = -19835.387223 eV Core-core repulsion = 16666.179929 eV Total energy + Delta-G solvation = -3169.207294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39051 -38.23072 -36.69774 -34.84438 -32.70396 -32.10997 -31.87559 -29.27579 -28.04586 -26.03740 -24.17123 -23.52991 -22.12762 -19.93469 -19.53154 -17.17254 -17.02546 -16.57194 -15.76485 -15.33304 -14.87142 -14.77437 -14.26935 -13.95317 -13.78326 -13.36494 -12.56241 -12.53791 -12.37362 -11.90403 -11.69432 -11.47536 -11.38475 -11.20469 -11.13685 -10.97647 -10.70212 -10.43494 -10.26554 -10.02082 -9.81092 -9.54532 -9.18274 -8.92744 -8.56590 -8.04381 -7.63779 -6.18287 -4.26853 0.86584 1.08996 1.75375 3.25197 3.30259 3.32719 3.53662 4.24474 4.32188 4.58764 4.82637 4.85625 4.90215 5.10351 5.15535 5.39753 5.52433 5.78665 5.83389 5.89426 5.96752 6.04932 6.21330 6.24953 6.41235 6.57721 6.70257 6.91466 7.13076 7.45159 7.53174 7.62276 7.72256 7.76449 7.85065 8.18688 8.75006 9.41619 9.54287 10.88589 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029339 B = 0.004041 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.134788 B = 6927.555674 C = 7411.148175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.143 4.143 12 C 0.042 3.958 13 N -0.522 5.522 14 C 0.093 3.907 15 C 0.171 3.829 16 C -0.152 4.152 17 C -0.065 4.065 18 C -0.165 4.165 19 C 0.178 3.822 20 Cl -0.040 7.040 21 N -0.471 5.471 22 C 0.059 3.941 23 H 0.267 0.733 24 H 0.377 0.623 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.049 0.951 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -16.632 5.449 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.212 3.788 10 O -0.387 6.387 11 C -0.182 4.182 12 C -0.085 4.085 13 N -0.246 5.246 14 C -0.036 4.036 15 C 0.032 3.968 16 C -0.172 4.172 17 C -0.090 4.090 18 C -0.186 4.186 19 C 0.013 3.987 20 Cl -0.011 7.011 21 N -0.182 5.182 22 C -0.067 4.067 23 H 0.077 0.923 24 H 0.226 0.774 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.067 0.933 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.795 -16.552 5.538 17.472 hybrid contribution 0.234 1.172 0.554 1.317 sum 1.029 -15.380 6.092 16.574 Atomic orbital electron populations 1.69736 1.05946 1.27472 1.50146 1.24994 0.94962 0.99373 0.93684 0.86544 0.79592 0.82464 0.78729 1.20061 1.21163 1.20184 1.21503 0.93472 0.90724 1.51917 0.92162 1.19515 0.86852 0.90439 0.81983 1.86132 1.51402 1.56697 1.44486 1.23249 1.02567 0.92034 1.00387 1.22885 0.93461 0.95766 0.96415 1.63653 1.08833 1.21773 1.30390 1.21197 0.94645 0.91117 0.96599 1.21173 0.91629 0.95159 0.88804 1.22066 1.01371 0.93081 1.00715 1.21562 0.93550 0.99039 0.94898 1.21760 1.01436 0.97632 0.97779 1.21594 0.94191 0.90717 0.92219 1.98399 1.58998 1.98360 1.45360 1.66818 1.05868 1.29823 1.15724 1.23013 0.95206 0.90254 0.98257 0.92335 0.77418 0.90563 0.92648 0.92346 0.92743 0.92779 0.89325 0.83862 0.83905 0.84081 0.93295 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 10.75 55.43 0.60 -23.53 16 2 C 0.07 1.93 5.29 -17.82 -0.09 1.83 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.44 8.27 -34.44 -0.28 -14.73 16 8 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 9 C 0.25 6.32 0.87 -89.63 -0.08 6.24 16 10 O -0.58 -15.34 13.16 -35.23 -0.46 -15.80 16 11 C -0.14 -3.42 5.37 -24.91 -0.13 -3.55 16 12 C 0.04 0.89 6.30 -2.84 -0.02 0.87 16 13 N -0.52 -10.21 5.15 -232.69 -1.20 -11.41 16 14 C 0.09 1.48 4.88 -4.98 -0.02 1.45 16 15 C 0.17 2.52 5.95 -82.59 -0.49 2.03 16 16 C -0.15 -1.78 9.72 -39.44 -0.38 -2.16 16 17 C -0.06 -0.63 10.17 -39.28 -0.40 -1.03 16 18 C -0.16 -1.75 9.88 -39.40 -0.39 -2.14 16 19 C 0.18 2.41 7.27 -17.45 -0.13 2.28 16 20 Cl -0.04 -0.49 29.11 -51.86 -1.51 -2.00 16 21 N -0.47 -7.46 9.04 -6.62 -0.06 -7.52 16 22 C 0.06 1.28 5.86 -2.30 -0.01 1.26 16 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.38 10.06 7.56 45.56 0.34 10.41 16 25 H 0.08 1.94 7.54 -51.93 -0.39 1.55 16 26 H 0.05 1.35 8.04 -51.93 -0.42 0.94 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.11 6.44 -51.93 -0.33 0.77 16 29 H 0.05 0.89 7.96 -51.93 -0.41 0.48 16 30 H 0.09 1.18 7.97 -51.93 -0.41 0.76 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -29.05 307.65 -9.14 -38.19 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.68 Total: 9.39 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.44 Total: -7.64 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.66 Total: -42.46 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.46 Total: -15.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.05 -9.14 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.740 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds